Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1024 114 1e-20 seq576 107 2e-18 seq1149 91.5 1e-13 seq187 86.0 6e-12 >seq1024 Length=37034 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| |||||| ||||||| |||| ||||| | || Sbjct 17615 ATGCAAATCTTCGTCAAAACCCTCACAGGCAAACACATCACCCTCGAAGTCGAACCAACA 17556 Query 38304 GACAGCGTGCAA-ACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | ||| | |||| || |||| |||||||| || || || | || || Sbjct 17555 GACCGTATCGAGGACG-TCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGATCA 17497 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | ||| || ||||| | || |||| ||||||| | |||||| Sbjct 17496 ACAACGTCTTATCTTCGCTGGTAAACAATTAGAAGACGGCAACACCCTCCAAGACTACTC 17437 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| || ||| Sbjct 17436 CATCCAAAAGGACTCAACCCTCCACTTGGTTCTCCGT 17400 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || || ||||||| |||| ||||| | || Sbjct 16931 ATGCAAATCTTCGTCAAAACCCTCACAGGAAAGCACATCACCCTCGAAGTCGAACCAACA 16872 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | || | |||| || |||| |||||||| || || || | || ||| Sbjct 16871 GACCGTATCGAAGATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGATCAA 16812 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||||| || || ||||| | || |||| ||||||| | |||||| | Sbjct 16811 CAACGTCTCATTTTTGCTGGTAAACAATTAGAAGACGGCAACACCCTCCAAGACTACTCC 16752 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | || || || ||||| || ||| Sbjct 16751 ATCCAAAAGGATTCAACCCTCCACTTGGTTCTTCGT 16716 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||||| | || ||||| | || Sbjct 17159 ATGCAAATCTTCGTTAAGACACTCACAGGAAAGCACATCACCCTTGAAGTCGAACCAACA 17100 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | || | || | ||||||| |||||||| |||||||| | || ||| Sbjct 17099 GATCGTATCGAAGATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 17040 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||||| || || ||||| | || || | ||||||| | |||||| | Sbjct 17039 CAACGTCTCATTTTTGCTGGTAAACAATTAGAAGATGGAAACACCCTCCAAGACTACTCC 16980 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | || || || ||||| || ||| Sbjct 16979 ATCCAAAAGGACTCAACCCTCCACTTGGTTCTCCGT 16944 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||||| | || ||||| | || Sbjct 17387 ATGCAAATCTTCGTTAAGACACTCACAGGAAAGCACATCACCCTTGAAGTCGAACCAACA 17328 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | || | || | ||||||| |||||||| |||||||| | || ||| Sbjct 17327 GATCGTATCGAAGATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAA 17268 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||||| || || ||||| | || || | ||||||| | |||||| | Sbjct 17267 CAACGTCTCATTTTTGCTGGTAAACAATTAGAAGATGGAAACACCCTCCAAGACTACTCC 17208 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | || || || ||||| || ||| Sbjct 17207 ATCCAAAAGGACTCAACCCTCCACTTGGTTCTCCGT 17172 >seq576 Length=101662 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || || ||||| ||| || | || |||||| | || Sbjct 65625 ATGCAGATTTTCGTAAAGACCCTTACTGGCAAGCACATTACACTTGAAGTCGAGCCAACT 65566 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||||| | || |||| | ||||| | ||||| ||||||||||| | || ||| Sbjct 65565 GACAGAATTGAAGATGTTAAGGCCAAAATTCAAGACAAGGAGGGAATTCCACCAGATCAA 65506 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| || |||||||| |||| |||| |||||| | || ||| | Sbjct 65505 CAGCGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGAAACACCCTTCAAGATTACTCC 65446 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || || || ||||| || ||| | | ||||| Sbjct 65445 ATCCAAAAGGATTCAACCCTCCACTTGGTTCTCCGTCTTCGTGGCGG 65399 Score = 93.3 bits (102), Expect = 4e-14 Identities = 165/236 (70%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| |||||||| || || || || ||| |||||| | || ||||| Sbjct 65857 AAAGATGCAAATCTTCGTAAAGACTCTTACTGGAAAACACATCACACTTGAAGTCGA--- 65801 Query 38300 CACCGACAG--CGTG-CAA--ACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 ||| |||| ||| | | ||| | |||| || |||| ||||| ||||||||||| Sbjct 65800 -ACCAACAGATCGTATCGAGGACG-TCAAAGCCAAGATCCAAGACAAGGAGGGAATTCCA 65743 Query 38355 GCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 | ||||||||||| | || | ||| || || || || || |||| ||| || | Sbjct 65742 CCAGACCAACAGCGTTTAATCTTCGCCGGAAAGCAACTCGAAGACGGAAACACACTTCAG 65683 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||| |||||||| | || || || || || || ||| | | ||||| Sbjct 65682 GACTACTCCATTCAAAAGGACTCTACACTTCACTTAGTCCTTCGTCTTCGTGGCGG 65627 >seq1149 Length=154106 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || ||| ||||||| |||| ||||| ||| Sbjct 59806 ATGCAGATTTTCGTGAAAACATTGACTGGAAAACACATCACCCTCGAAGTCGA----ACC 59861 Query 38304 GACAG--CGT---GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 |||| ||| | | ||| | |||| || |||| ||||| ||||||||||| | | Sbjct 59862 AACAGATCGTATTGAAGACG-TGAAAGCCAAGATCCAAGACAAGGAGGGAATTCCACCAG 59920 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | ||||| || || |||| ||| || || || || || |||| ||| || | |||| Sbjct 59921 ATCAACAACGTCTTATTTTCGCCGGAAAGCAACTCGAAGACGGAAACACACTTCAAGACT 59980 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||| |||||||| | || || || || || || || Sbjct 59981 ACTCCATTCAAAAGGATTCAACCCTCCACTTAGTTCTTCG 60020 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || || || || || ||||||| |||| ||||| ||| Sbjct 59578 ATGCAAATCTTCGTAAAGACCCTTACTGGAAAGCACATCACCCTCGAAGTCGA----ACC 59633 Query 38304 GACAG--CGT---GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 |||| ||| | | ||| | |||| || |||| ||||| ||||||||||| | | Sbjct 59634 AACAGATCGTATTGAAGACG-TGAAAGCCAAGATCCAAGACAAGGAGGGAATTCCACCAG 59692 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | ||||| || || |||| ||| || || || || || |||| ||| || | |||| Sbjct 59693 ATCAACAACGTCTTATTTTCGCCGGAAAGCAACTCGAAGACGGAAACACACTTCAAGACT 59752 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||| || || | || || || | || || || || ||||| || Sbjct 59753 ATTCAATCCAGAAAGATTCCACACTTCACCTTGTTCTCCGCTTAAGAGGTGG 59804 >seq187 Length=9559 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| || || || || || || ||||| ||||||| |||| ||||| | Sbjct 4207 AAAGATGCAAATCTTTGTTAAGACCCTTACAGGCAAGCACATCACCCTCGAAGTCGAACC 4266 Query 38300 CACCGACAGCGTGCAA-ACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || ||| | | | ||| | |||| || |||| ||||| || || || || | | Sbjct 4267 AACAGACCGTATCGAGGACG-TCAAAGCTAAGATCCAAGACAAGGAAGGTATCCCACCAG 4325 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | ||||| || || || | ||| || || || || || |||| ||||||| | |||| Sbjct 4326 ATCAACAACGTCTTATCTTCGCCGGTAAGCAACTCGAAGACGGCAACACCCTCCAAGACT 4385 Query 38419 ACAACATCCAAAAGGA 38434 || |||||||||||| Sbjct 4386 ACTCCATCCAAAAGGA 4401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500163546803200