Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq892 87.8 2e-12 >seq892 Length=50406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 65854 GTAATAGGAATAGATGAAGGCCAATTCTTTCAAGATATTGTAGAGTTTTGTGAAAATATG 65913 || || || || || |||| ||||| || |||||| | ||||| | || ||| Sbjct 16858 GTGATTGGGATCGACGAAGCACAATTTTTCTCGGATATTTTCGAGTTCGCGCAGAAGATG 16917 Query 65914 GCAAATAAAGGAAAAATAGTGATAGTTGCAGCATTGGATGGAACATTTAAAAGAAAACCT 65973 |||||| || ||||| || |||||||| || | ||||||||||||||||| | ||| Sbjct 16918 GCAAATTGCGGCAAAATGGTTCTAGTTGCATCACTTGATGGAACATTTAAAAGGGAGCCT 16977 Query 65974 TTTGGTAATGTATTAAATTTAATTCCATTATCTGAAACAGTAACAAAACTTACAGCTGTG 66033 ||||| || | | ||||| || ||| ||| || | || ||||| | ||| | Sbjct 16978 TTTGGCAAATCCCTCGAATTAATATCAGTATGCGAATCAATCACCAAACTGTCGGCTATT 17037 Query 66034 TGTATGAAATGTTTTAAAGATGCATCTTTTTCAAAACGTAT 66074 |||| | || | ||||| ||| |||| ||||||| || Sbjct 17038 TGTAGGGAAACTGGAAAAGACGCAGCTTTCACAAAACGAAT 17078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562098400987200