Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1164 102 1e-16 >seq1164 Length=31805 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 78230 TGATGTTATTGGAATTGATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAA 78289 |||||||||||| ||||||||| |||||||| ||| | || ||||||||||||| Sbjct 10338 TGATGTTATTGGTGTTGATGAAGCACAATTTTTCTCGGATGTCGTTGAATTTTCTGAAAG 10279 Query 78290 TATGGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAA 78349 | ||||| || ||||| ||||||| ||| | | | |||| |||| ||| ||||| Sbjct 10278 GTTAGCAAACAATGGAAAGGTTGTTATCGTTGCAGGCCTCGATGGAACATTTCAGAGAAA 10219 Query 78350 AACATTTGGTAATATTCTAAATTTAATTCCATTATCTGAAA 78390 | |||| || ||||| | ||| ||||| | || ||||| Sbjct 10218 ACCATTCGGCCATATTTTGAATCTAATTTCTCGATGTGAAA 10178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592305842139200