Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq576 109 4e-19 seq710 91.5 1e-13 seq582 89.7 4e-13 seq716 87.8 1e-12 seq639 82.4 6e-11 >seq576 Length=101662 Score = 109 bits (120), Expect = 4e-19 Identities = 174/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 101221 TTATTTAATATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTC 101280 |||||||||| | |||| | || || | | ||| | ||| || || ||||| || || Sbjct 65380 TTATTTAATAAATTAGAAA---CCGCCACGAAGACGGAGAACCAAGTGGAGGGTTGAATC 65436 Query 101281 TTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATAT 101340 ||||| || |||||| | || | | || |||||||| || || ||||| || Sbjct 65437 CTTTTGGATGGAGTAATCTTGAAGGGTGTTTCCGTCTTCCAATTGTTTGCCAGCAAAAAT 65496 Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||||||||||||||| || ||||| || || || ||||||||||| || ||| ||| Sbjct 65497 CAAACGCTGTTGATCTGGTGGAATTCCCTCCTTGTCTTGAATTTTGGCCTTAACATCTTC 65556 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | |||||| | || |||||||| || | ||||| || | || ||||| || Sbjct 65557 AATTCTGTCAGTTGGCTCGACTTCAAGTGTAATGTGCTTGCCAGTAAGGGTCTTTACGAA 65616 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 65617 AATCTGCAT 65625 >seq710 Length=73582 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || |||||||| || ||| || || || | |||| || ||||| Sbjct 11800 ATGAAGGGTCGAATCTTTTTGAATTGAGTAGTCTTGGAGGGTGTTTCCATCCTCTAATTG 11741 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || |||||||||||||||||||||||||| || ||||| ||||| || || || || || Sbjct 11740 TTTTCCTGCAAATATCAAACGCTGTTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTT 11681 >seq582 Length=225330 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||| ||||| ||||| || || ||||| | || | | Sbjct 127357 ACGAAGAACGAGGTGAAGCGTAGAGTCTTTCTGAATTGAATAATCTTGAAGGGTGTTTCC 127298 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| || |||||||||||||||||||||||||| || ||||| ||||| || Sbjct 127297 ATCCTCCAATTGTTTTCCTGCAAATATCAAACGCTGTTGATCAGGAGGAATTCCTTCCTT 127238 Query 101374 ATCTTGAATTTT 101385 ||| || || || Sbjct 127237 ATCCTGGATCTT 127226 >seq716 Length=195740 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | || || || || || ||||| || |||||| | ||| | | Sbjct 164639 ACGAAGAACAAGGTGGAGTGTTGAGTCCTTTTGAATGGAGTAATCTTGAAGAGTGTTTCC 164580 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || || || || ||||| ||||| || || ||||| ||||| || Sbjct 164579 ATCTTCGAGTTGCTTTCCAGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCCTT 164520 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| || ||| ||| | | ||| | | ||| |||||||| |||| Sbjct 164519 ATCTTGAATTTTGGCCTTGACATCTTCGATACGGTCGGTTGGTTCGACTTCAAGTGTGAT 164460 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | ||||| || || || ||||| Sbjct 164459 ATGCTTGCCTGTGAGTGTTTTCACGAAGATTTGCAT 164424 >seq639 Length=86550 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || || |||||||| || ||| || || || | |||| || ||||| Sbjct 86314 ATGGAGAGTCGAGTCTTTTTGGATTGAGTAGTCTTGGAGGGTGTTTCCATCCTCTAATTG 86255 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || |||||||||||||||||||||||||| || ||||| ||||| || || || || || Sbjct 86254 TTTTCCTGCAAATATCAAACGCTGTTGATCAGGGGGAATTCCTTCCTTGTCCTGGATCTT 86195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396271252128360