Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq769 82.4 9e-11 >seq769 Length=64858 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 141218 TGAGTAAGGACAAGATGTTGGCTTTCATCTCTGGCGATGAGAGAGATAATTTTAGCGGAT 141277 |||| ||| | |||||||| | |||||| | |||||||| || ||| || | Sbjct 8567 TGAGAAAGAATGAGATGTTGACATTCATCAGTTGCGATGAGCTTAATGATTGATGCATTT 8626 Query 141278 CCTTCCATAACTTTGAGTTCACCAAACGCAAACGAGCAAGCGAAGGATACATAGAACCTA 141337 || |||| | ||| |||||| || ||||| ||||| ||||| || || ||||| | | Sbjct 8627 CCAACCATTAATTTATTTTCACCGAATGCAAAAGAGCATGCGAAAGAAACGTAGAAACGA 8686 Query 141338 ATGCCCTCAAGAATGTTGACATT 141360 || || ||||||||||| ||||| Sbjct 8687 ATTCCTTCAAGAATGTTCACATT 8709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578987688529600