Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq422 102 1e-16 >seq422 Length=116156 Score = 102 bits (112), Expect = 1e-16 Identities = 257/387 (66%), Gaps = 18/387 (5%) Strand=Plus/Minus Query 47787 TCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTC 47846 ||||||||| | |||| ||||| ||| || | ||| || || | ||| || Sbjct 92157 TCCTGTGGCGACAACATAATCAGAGGGTGTGTCCTTTTGGAGGATGAGATGCATTGCGCG 92098 Query 47847 GACATAATCTCTGGCATGTCCCCAGTCACGA--AGTGCATCAAGATTTCCTAGATATAAA 47904 ||||||||| | ||||| |||||||| | || || | || ||||| || || Sbjct 92097 AACATAATCTTTCGCATGGCCCCAGTCTCTTTTAGCGCTT--AGGTTTCCGAGCATTATT 92040 Query 47905 CAGTCTTGCTTACCTTCAGAGATTGCTTTT----AATGCTCTTGTAATCTTACGAGTTAC 47960 || ||||| ||| |||| | | || | || | || ||||| | || || Sbjct 92039 TCGTTTTGCTGACC----GAGAAGGATCTTCGCAACAGCGCGGGTGATCTTCCTGGTCAC 91984 Query 47961 AAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACAT 48020 ||| |||||||| || ||||||||||| || || | ||| || || | |||| ||| Sbjct 91983 AAATGTTTCACCGCGAAGCGGAGATTCATGGTTGAACAAAATGCCGTTAGATGCATGCAT 91924 Query 48021 TCCGTATGATTCACGATAGTTCTTTACT---ATCCAGTACCCATAGAGTTTTGCAACACC 48077 ||| |||| ||| |||||| |||||| ||||| || |||| || || || | Sbjct 91923 TCCATATGCTTCTCGATAG---TTTACTGTGATCCAATAAGCATAAAGCTTGGCGCAGGC 91867 Query 48078 ATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACC 48137 ||||| || | ||||||||| || || || || |||||||| ||||| || ||| Sbjct 91866 GTAAGGCGATCTTGGATAGAATGGAGTTGTTTCCTTCTGTGGAACTTCTTGGACTAAACC 91807 Query 48138 ATAAAGTTCACTGGTGGATGCTTGATA 48164 || ||||| || || || ||||| Sbjct 91806 GTAGAGTTCTGATGTTGAAGCCTGATA 91780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665482088353600