Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1146 113 8e-20 seq785 87.8 3e-12 seq959 86.0 1e-11 seq893 86.0 1e-11 seq1024 84.2 4e-11 seq393 84.2 4e-11 >seq1146 Length=32655 Score = 113 bits (124), Expect = 8e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| |||||| ||||||||||||||||||||| || |||||||||||||| Sbjct 29701 ATCTTCGAGTTGCTTTCCGCTAAAAATTAATCTCTGTTGATCTGGTGGTATTCCTTCTTT 29642 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| |||||| ||| | || | ||| |||| ||| | ||| | ||||||| Sbjct 29641 ATCTTGAATTTTGTGTTTCACATCGATAATTCTATCATGAGAGTTAACATAAAGAGTTAC 29582 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTT 193356 | ||||| || || ||||| | ||||||| Sbjct 29581 ATGCTTACCAGTAAGAGTTTTGATGAATATTT 29550 >seq785 Length=62999 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || |||||||||||||| ||||| || | |||||||| || || ||||||||||| Sbjct 32566 ATCTTCCAATTGTTTTCCGGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTT 32507 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| ||||||| || | | || | || | | |||||||| ||||| || Sbjct 32506 GTCTTGGATTTTGGCCTTGACGTCCTCGATTCTGTCTGTTGGTTCAACTTCCAGAGTAAT 32447 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || ||||| || ||||| Sbjct 32446 GTGCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 32411 >seq959 Length=42966 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || ||||||||||| ||||| || || | | |||||||| || || ||||||||||| Sbjct 25432 TCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTTG 25373 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| ||| | || | ||| |||| | || ||||| || || || Sbjct 25372 TCTTGGATTTTGGCTTTGACATCTTCGATACGGTCGGTTGGTTCGACTTCGAGTGTGATG 25313 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362 || || || || || || || || |||||||||| Sbjct 25312 TGCTTTCCAGTGAGTGTCTTGACGAAAATTTGCATTT 25276 >seq893 Length=173055 Score = 86.0 bits (94), Expect = 1e-11 Identities = 164/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTC-TTTAGAAATATT 193183 ||||| | ||||| | || || || || ||||| | ||||| || ||||||| | Sbjct 14706 ATTTAAAACCCACCACGAAAACGGAGAACAAGATGAAGTGTAGAATCCTTTAGAA-TCGA 14764 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | ||| | |||| || |||||||| || || || || | | ||||| Sbjct 14765 GTAATCTTGAAGCGTGTTTCAATCTTCCAATTGTTTACCAGCGAAGATAAGACGTTGTTG 14824 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || ||||| || ||||||||||| |||| ||| | | | |||| ||| | Sbjct 14825 GTCTGGTGGAATTCCCTCCTTATCTTGTATCTTGGCTTTGACGTCTTCAATACGATCTGT 14884 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362 | |||||||| || || || || | ||| ||||| || || ||||||||||||| Sbjct 14885 TGGTTCAACTTCAAGGGTGATGTGCTTTCATGTGAGCGTCTTAACGAATATTTGCATTT 14943 >seq1024 Length=37034 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| ||||||||||| || |||||||| | | |||||||| || || ||||||||||| Sbjct 17004 ATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTT 17063 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| ||||| | || | || | ||| ||| | | || ||||| || || || Sbjct 17064 GTCTTGGATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGAT 17123 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || || |||||||| Sbjct 17124 GTGCTTTCCTGTGAGTGTCTTAACGAAGATTTGCAT 17159 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| ||||||||||| || |||||||| | | |||||||| || || ||||||||||| Sbjct 17232 ATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTT 17291 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| ||||| | || | || | ||| ||| | | || ||||| || || || Sbjct 17292 GTCTTGGATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGAT 17351 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || || |||||||| Sbjct 17352 GTGCTTTCCTGTGAGTGTCTTAACGAAGATTTGCAT 17387 >seq393 Length=120711 Score = 84.2 bits (92), Expect = 4e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||||||| || ||||| || || | | |||||||| || || ||||||||||| Sbjct 67537 TCTTCTAATTGCTTACCGGCGAAGATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 67478 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | | | ||| ||||| | ||| ||||| || || ||| Sbjct 67477 TCTTGAATCTTAGCTTTAACGTCTTCGATACGATCGGTTGGCTCGACTTCGAGTGTAATA 67418 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 || ||||| || || || || || ||||||||| || Sbjct 67417 TGCTTTCCTGTAAGTGTCTTGACGAAGATTTGCATTCTA 67379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899637756393600