Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1149 91.5 2e-13 seq1146 89.7 8e-13 >seq1149 Length=154106 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | |||||||||||||||||| || || | ||||||||| | Sbjct 59806 ATGCAGATTTTCGTGAAAACATTGACTGGAAAACACATCACCCTCGAAGTCGAACCAACA 59865 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||| |||| | |||||||| || || ||||| || || || || || ||||| ||| Sbjct 59866 GATCGTATTGAAGACGTGAAAGCCAAGATCCAAGACAAGGAGGGAATTCCACCAGATCAA 59925 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| | | |||| ||||| ||||| |||||||| Sbjct 59926 CAACGTCTTATTTTCGCCGGAAAGCAACTCGAAGA 59960 >seq1146 Length=32655 Score = 89.7 bits (98), Expect = 8e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| | | |||||| | ||||| |||||||||||||| ||||| ||||| || Sbjct 29605 TGATAGAATTATCGATGTGAAACACAAAATTCAAGATAAAGAAGGAATACCACCAGATCA 29664 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| ||||| |||| | ||| ||||| ||||||||| Sbjct 29665 ACAGAGATTAATTTTTAGCGGAAAGCAACTCGAAGAT 29701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731858460368000