Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1024 95.1 2e-14 seq1146 89.7 1e-12 seq785 86.0 1e-11 >seq1024 Length=37034 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || ||||||||||||||||| || | | |||||||| ||||| |||||||||| Sbjct 17003 CATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTT 17062 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| |||||| || |||| ||| ||||| | ||| ||||| || || | Sbjct 17063 TGTCTTGGATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGA 17122 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || | ||| |||| || || ||||| Sbjct 17123 TGTGCTTTCCTGTGAGTGTCTTAACGAAGATTTGCAT 17159 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || ||||||||||||||||| || | | |||||||| ||||| |||||||||| Sbjct 17231 CATCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTT 17290 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| |||||| || |||| ||| ||||| | ||| ||||| || || | Sbjct 17291 TGTCTTGGATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGA 17350 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || | ||| |||| || || ||||| Sbjct 17351 TGTGCTTTCCTGTGAGTGTCTTAACGAAGATTTGCAT 17387 >seq1146 Length=32655 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | ||| || || ||| ||||||||||||||||| |||||||||||||||| Sbjct 29702 CATCTTCGAGTTGCTTTCCGCTAAAAATTAATCTCTGTTGATCTGGTGGTATTCCTTCTT 29643 Query 192440 TATCTTGTATTTTATTTTTTACAT 192463 ||||||| ||||| | ||| |||| Sbjct 29642 TATCTTGAATTTTGTGTTTCACAT 29619 >seq785 Length=62999 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/161 (72%), Gaps = 8/161 (5%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| ||||||||||| || || || || || | |||||||| ||||| |||||||||| Sbjct 32567 CATCTTCCAATTGTTTTCCGGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTT 32508 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC----GATTCTACTTCTAGA 192495 | ||||| ||||| || || || | || |||| | | ||| ||||| ||| Sbjct 32507 TGTCTTGGATTTTGGCCTTGAC----GTCCTCGATTCTGTCTGTTGGTTCAACTTCCAGA 32452 Query 192496 GTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||| || || || | ||| || | ||| |||||||| Sbjct 32451 GTAATGTGCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 32411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984461331798000