Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1024 95.1 2e-14 seq1146 93.3 8e-14 seq893 86.0 1e-11 seq576 86.0 1e-11 >seq1024 Length=37034 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || |||||||||||||||||||| | | ||||| || ||||| ||||||||||| Sbjct 17005 TCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 17064 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| || |||| ||| ||||| | ||| ||||| || || ||| Sbjct 17065 TCTTGGATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGATG 17124 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || | ||| |||| ||| || ||||| Sbjct 17125 TGCTTTCCTGTGAGTGTCTTAACGAAGATTTGCAT 17159 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || |||||||||||||||||||| | | ||||| || ||||| ||||||||||| Sbjct 17233 TCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 17292 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| || |||| ||| ||||| | ||| ||||| || || ||| Sbjct 17293 TCTTGGATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGATG 17352 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || | ||| |||| ||| || ||||| Sbjct 17353 TGCTTTCCTGTGAGTGTCTTAACGAAGATTTGCAT 17387 >seq1146 Length=32655 Score = 93.3 bits (102), Expect = 8e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 171935 AAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTAC 171994 |||||||||||||||||| || ||||||||||||||||||||||| ||||| | ||| || Sbjct 29680 AAAAATTAATCTCTGTTGATCTGGTGGTATTCCTTCTTTATCTTGAATTTTGTGTTTCAC 29621 Query 171995 ATTAGTTATAGTATC-TGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTT 172053 || | || |||| ||| || | || | ||||| | |||||||| | |||| Sbjct 29620 ATCGATAATTCTATCATGA-GAGTTAACATAAAGAGTTACATGCTTACCAGTAAGAGTTT 29562 Query 172054 TAATGAATAT 172063 | |||||||| Sbjct 29561 TGATGAATAT 29552 >seq893 Length=173055 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||||||||| || || | | |||||||| ||||| ||||| || ||| Sbjct 14787 TCTTCCAATTGTTTACCAGCGAAGATAAGACGTTGTTGGTCTGGTGGAATTCCCTCCTTA 14846 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 |||||||| || ||| || | ||| ||||| | ||| ||||| || || ||| Sbjct 14847 TCTTGTATCTTGGCTTTGACGTCTTCAATACGATCTGTTGGTTCAACTTCAAGGGTGATG 14906 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 || | || | || |||| |||||| ||||||| Sbjct 14907 TGCTTTCATGTGAGCGTCTTAACGAATATTTGCATTT 14943 >seq576 Length=101662 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| ||||||||||| ||||||||||| || | |||||| || ||||| ||||| || | Sbjct 65469 CGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGCTGTTGATCTGGTGGAATTCCCTCCT 65528 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| ||||| || |||| || | || | | || ||||| || |||| Sbjct 65529 TGTCTTGAATTTTGGCCTTAACATCTTCAATTCTGTCAGTTGGCTCGACTTCAAGTGTAA 65588 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | || || | ||| |||||||| Sbjct 65589 TGTGCTTGCCAGTAAGGGTCTTTACGAAAATCTGCAT 65625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905119254984000