Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq664 98.7 3e-15 >seq664 Length=81546 Score = 98.7 bits (108), Expect = 3e-15 Identities = 103/135 (76%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 301827 ACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATT 301886 ||| ||||||||| | || ||||| || | | |||||||||||||||||||| || Sbjct 77390 ACGTGGAACACCAAGTGTAACGTTT---TTAGCTGACACACCAGCAAAGTGGAAAGTGTT 77334 Query 301887 CAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTC 301946 || || | ||| |||| ||| ||||| ||| ||| | ||||| ||||||||||||| Sbjct 77333 AAGTGTCATTTGTGTAGATGGTTCACCGATAGATTGACCAGCAATAGTACCAACCATTTC 77274 Query 301947 TCCTGGTGCTACAAT 301961 ||||||| ||||| Sbjct 77273 ACCTGGTGAAACAAT 77259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471789690658760