Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1252 91.5 2e-12 >seq1252 Length=23838 Score = 91.5 bits (100), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | || ||||| ||||| || || || || | | |||| Sbjct 22213 GCTTGGCGAGATCACCTGGAAGGACAAGGCGGACGGCAGTTTGAATTTCTCTTGAACCGA 22272 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| | | |||| || | || ||| || | || | |||| || |||| | Sbjct 22273 GGGTGTTTCTGTCGTTCATGTCGACGAGGCGGGCGCCTTCCTGGGCGATACGCTCGAAAA 22332 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | || | ||||| |||||||||||| ||| | |||||||||||| || | || |||| Sbjct 22333 TATCTGTAACAAATGAGTTCATGACCATCATGGCCTTGTTGGAGATACCGATATCTGGGT 22392 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAG 1254557 | || |||||||| || ||| ||||| | || ||| Sbjct 22393 GAACTTGCTTGAGAACTTTGAAGATGTAGGATGAG 22427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107017744269160