Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1252 122 1e-21 seq928 109 9e-18 seq1214 100 5e-15 seq35 100 5e-15 seq926 93.3 7e-13 seq841 91.5 2e-12 >seq1252 Length=23838 Score = 122 bits (134), Expect = 1e-21 Identities = 174/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 1485464 CATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGC 1485523 || ||||| | |||| |||||||||| ||| ||||||||||||||| |||| || || | Sbjct 22168 CAGCGTTGAATTTGGCGACGGCCTTGCCACCTTCTGAGACGGCGTGCTTGGCGAGATCAC 22227 Query 1485524 CGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT 1485583 | | | || ||||| ||||| || || || || | | |||| ||||| | | || Sbjct 22228 CTGGAAGGACAAGGCGGACGGCAGTTTGAATTTCTCTTGAACCGAGGGTGTTTCTGTCGT 22287 Query 1485584 TAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACG 1485643 | || | |||||| || | || | |||| || |||| || || | ||||| | Sbjct 22288 TCATGTCGACGAGGCGGGCGCCTTCCTGGGCGATACGCTCGAAAATATCTGTAACAAATG 22347 Query 1485644 AGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCA 1485703 ||||||||| | ||| | ||||||||||| || | || ||||| || |||||||| | Sbjct 22348 AGTTCATGACCATCATGGCCTTGTTGGAGATACCGATATCTGGGTGAACTTGCTTGAGAA 22407 Query 1485704 CCTTG 1485708 | ||| Sbjct 22408 CTTTG 22412 >seq928 Length=45926 Score = 109 bits (120), Expect = 9e-18 Identities = 171/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 1485464 CATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGC 1485523 || ||||| | |||| |||||||||| ||| ||||||||||||||| |||| || || | Sbjct 3315 CAGCGTTGAATTTGGCGACGGCCTTGCCACCTTCTGAGACGGCGTGCTTGGCGAGATCAC 3256 Query 1485524 CGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT 1485583 | | | || || || ||||| || || || || | | || | ||||| | | || Sbjct 3255 CTGGAAGGACAAGACGGACGGCAGTTTGAATTTCTCTTGAACCAAGTGTGTTTCTGTCGT 3196 Query 1485584 TAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACG 1485643 | || | |||||| || | || | |||| || |||| || || | ||||| | Sbjct 3195 TCATGTCGACGAGGCGGGCGCCTTCTTGGGCGATACGCTCGAAAATATCTGTAACAAATG 3136 Query 1485644 AGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCA 1485703 ||||||| | | ||| | |||||| ||||| || | || ||||| ||||| || || | Sbjct 3135 AGTTCATAACCATCATAGCTTTGTTTGAGATACCGATATCTGGGTGGACCTGTTTAAGGA 3076 Query 1485704 CCTTG 1485708 ||||| Sbjct 3075 CCTTG 3071 >seq1214 Length=28688 Score = 100 bits (110), Expect = 5e-15 Identities = 176/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 ||||| | |||| ||| || ||| ||| ||||||||||||||| | ||||| || || Sbjct 11289 CGTTGAATTTGGCGACAGCTTTGCCACCTTCTGAGACGGCGTGCTTCGCCAGATCACCTG 11348 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 | | || || || || || || || || || | | ||||| ||||| | | ||| Sbjct 11349 GTAAGACAAGACGGACTGCTGTTTGAATTTCTCTTGAGCCGAGGGTGTTTCTGTCGTTCA 11408 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 || | |||||| || | || | | || || |||| || ||| |||| || |||| Sbjct 11409 TGTCGACGAGGCGGGCGCCTTCTTGGGCAATACGCTCGAAAATATCGGTGACGAATGAGT 11468 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 |||||| | ||| | ||||| || || || | || ||||| || || ||||| || | Sbjct 11469 TCATGACCATCATGGCNTTGTTTGAAATACCNATATCTGGGTGAACTTGTTTGAGGACTT 11528 Query 1485707 TGTAAACAAAGGACGAG 1485723 || ||| |||| ||| Sbjct 11529 TGAAAATGTAGGAAGAG 11545 >seq35 Length=136393 Score = 100 bits (110), Expect = 5e-15 Identities = 176/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 ||||| | |||| ||| || ||| ||| ||||||||||||||| | ||||| || || Sbjct 21846 CGTTGAATTTGGCGACAGCTTTGCCACCTTCTGAGACGGCGTGCTTCGCCAGATCACCTG 21787 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 | | || || || || || || || || || | | ||||| ||||| | | ||| Sbjct 21786 GTAAGACAAGACGGACTGCTGTTTGAATTTCTCTTGAGCCGAGGGTGTTTCTGTCGTTCA 21727 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 || | |||||| || | || | | || || |||| || ||| |||| || |||| Sbjct 21726 TGTCGACGAGGCGGGCGCCTTCTTGGGCAATACGCTCGAAAATATCGGTGACGAATGAGT 21667 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 |||||| | ||| | ||||| || || || | || ||||| || || ||||| || | Sbjct 21666 TCATGACCATCATGGCNTTGTTTGAAATACCNATATCTGGGTGAACTTGTTTGAGGACTT 21607 Query 1485707 TGTAAACAAAGGACGAG 1485723 || ||| |||| ||| Sbjct 21606 TGAAAATGTAGGAAGAG 21590 >seq926 Length=283667 Score = 93.3 bits (102), Expect = 7e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 ||||| | |||| ||||||||| ||| || |||||||||||| |||| || || || Sbjct 18346 CGTTGAATTTGGCGACGGCCTTTCCACCTTCAGAGACGGCGTGCTTGGCAAGGTCTCCTG 18287 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 | | || || || || || || || || || | | |||| ||||| | | ||| Sbjct 18286 GAAGGACCAAACGAACAGCTGTTTGAATTTCTCTTGAACCGAGAGTGTTTCTGTCGTTCA 18227 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 || | ||||| || | || |||| || |||| || || | ||||| |||| Sbjct 18226 TGTCGACAAGGCGAGCGCCTTCTTGAGCGATACGCTCGAAAATATCTGTAACAAATGAGT 18167 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 |||||| | ||| | ||||| ||||| || | || ||||| || |||||||| |||| Sbjct 18166 TCATGACCATCATAGCCTTGTTTGAGATACCAATATCTGGGTGAACTTGCTTGAGAACCT 18107 Query 1485707 T 1485707 | Sbjct 18106 T 18106 >seq841 Length=56523 Score = 91.5 bits (100), Expect = 2e-12 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 1485469 TTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGC 1485528 ||| | |||| |||||| ||| ||| |||||||||||||| |||| || || || | Sbjct 21737 TTGAATTTGGCGACGGCTTTGCCACCTTCTGAGACGGCGTGTTTGGCAAGGTCACCTGGG 21678 Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588 | | || || || || || ||||| || | | ||||| ||||| | | ||| || Sbjct 21677 AGAACCAAACGGACAGCTGTTTGGATTTCTCTTGAGCCGAGGGTGTTTCTGTCGTTCATG 21618 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||||| | | || | ||||| |||| ||||| |||| || |||||| Sbjct 21617 TCGACGAGGCGGGCTCCTTCCTGAGCAATGCGCTCGAAAATGTCTGTGACGAATGAGTTC 21558 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || | | ||| | |||||||| || || | || || || || |||||||| |||||| Sbjct 21557 ATAACCATCATGGCCTTGTTGGAAATACCGATATCTGGATGAACTTGCTTGAGAACCTTG 21498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916088965649720