Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1149 95.1 8e-15 seq576 89.7 3e-13 seq187 86.0 4e-12 >seq1149 Length=154106 Score = 95.1 bits (104), Expect = 8e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || ||||||||||||||||| || || ||||| || ||| | || | ||||||||| Sbjct 59732 TCTTCGAGTTGCTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATTCCCTCCTTG 59673 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTAT-CGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | || || ||| ||| | | || |||| |||| ||||| || | ||| || Sbjct 59672 TCTTGGATCTTGGCTTTCACGTCTTCAATACGATCTGTTGG-TTCGACTTCGAGGGTGAT 59614 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||||| || ||||||||||| ||||| ||||| Sbjct 59613 GTGCTTTCCAGTAAGGGTCTTTACGAAGATTTGCAT 59578 >seq576 Length=101662 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| | ||||| || ||||| |||||| |||||| || || | || Sbjct 65642 AGGACTAAGTGAAGTGTAGAGTCCTTTTGAATGGAGTAGTCCTGAAGTGTGTTTCCGTCT 65701 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||||||||||||||| | || || |||||| | || | ||||||||||| Sbjct 65702 TCGAGTTGCTTTCCGGCGAAGATTAAACGCTGTTGGTCTGGTGGAATTCCCTCCTTGTCT 65761 Query 34886 TTTATTTTTTGTTTGACGGATGCTAT-CGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||||| | || |||| |||| ||||| |||| || ||| Sbjct 65762 TGGATCTTGGCTTTGACGTCCTCGATACGATCTGTTGG-TTCGACTTCAAGTGTGATGTG 65820 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| ||||| ||||| Sbjct 65821 TTTTCCAGTAAGAGTCTTTACGAAGATTTGCAT 65853 >seq187 Length=9559 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880 |||| || |||||||| ||||||||||| || ||||| || ||| | || | || |||| Sbjct 4595 CATCTTCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCCT 4536 Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTAT-CGATTCATTGGCCTCGACATCAACGGTT 34939 |||| | || || ||||||| | || || | |||| ||||| |||| || Sbjct 4535 TGTCTTGGATCTTNGCTTTGACGTCCTCGATACGGTCTGTTGG-TTCGACTTCAAGNGTG 4477 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| |||||| |||||||| || || ||||| ||||| Sbjct 4476 ATGTGCTTTCCTGTGAGGGTTTTGACGAAGATTTGCAT 4439 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| || ||||| || ||| ||||| ||| || | || Sbjct 4422 AGGACAAGGTGAAGTGTAGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTGCCGTCT 4363 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||||||||| || ||||| || ||| | || | || |||||||| Sbjct 4362 TCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCT 4303 Query 34886 TTTATTTTTTGTTTGACGGATGCTAT-CGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||||| | || || | |||| ||||| || | ||| ||| Sbjct 4302 TGGATCTTAGCTTTGACGTCCTCGATACGGTCTGTTGG-TTCGACTTCGAGGGTGATGTG 4244 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || |||||||| |||||||| ||||| Sbjct 4243 CTTGCCTGTAAGGGTCTTAACAAAGATTTGCAT 4211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325686925316120