Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1024 109 9e-19 seq959 93.3 7e-14 >seq1024 Length=37034 Score = 109 bits (120), Expect = 9e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||| | |||||||| || || |||| || |||| | | Sbjct 17158 TGCAAATCTTCGTTAAGACACTCACAGGAAAGCACATCACCCTTGAAGTCGAACCAACAG 17099 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || ||| || |||| || |||||| ||| |||||||| |||||||| ||||||| Sbjct 17098 ATCGTATCGAAGATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAAC 17039 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || | ||||||||||| |||||||||||||| ||| Sbjct 17038 AACGTCTCATTTTTGCTGGTAAACAATTAGAAGAT 17004 Score = 109 bits (120), Expect = 9e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||| | |||||||| || || |||| || |||| | | Sbjct 17386 TGCAAATCTTCGTTAAGACACTCACAGGAAAGCACATCACCCTTGAAGTCGAACCAACAG 17327 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || ||| || |||| || |||||| ||| |||||||| |||||||| ||||||| Sbjct 17326 ATCGTATCGAAGATGTCAAGGCTAAAATCCAAGACAAAGAAGGAATTCCACCAGATCAAC 17267 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || | ||||||||||| |||||||||||||| ||| Sbjct 17266 AACGTCTCATTTTTGCTGGTAAACAATTAGAAGAT 17232 Score = 89.7 bits (98), Expect = 8e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | |||||||| || || | || || |||| | | Sbjct 16930 TGCAAATCTTCGTCAAAACCCTCACAGGAAAGCACATCACCCTCGAAGTCGAACCAACAG 16871 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||| || |||| ||| || || ||| |||||||| || ||||| ||||||| Sbjct 16870 ACCGTATCGAAGATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGATCAAC 16811 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGA 146185 || | ||||||||||| |||||||||||||| || Sbjct 16810 AACGTCTCATTTTTGCTGGTAAACAATTAGAAGA 16777 >seq959 Length=42966 Score = 93.3 bits (102), Expect = 7e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||| | || ||||| || || | || || |||| | || Sbjct 25279 TGCAAATTTTCGTCAAGACACTCACTGGAAAGCACATCACACTCGAAGTCGAACCAACCG 25338 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||| || |||| ||| ||||| ||| |||||||| |||||||||||||||| Sbjct 25339 ACCGTATCGAAGATGTCAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCCGATCAAC 25398 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGA 146185 || | ||||| || || |||||||||||||| || Sbjct 25399 AACGTCTCATCTTCGCCGGTAAACAATTAGAAGA 25432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786151855921600