Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq576 100 2e-16 >seq576 Length=101662 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || || || ||||| ||| ||||| || |||| Sbjct 65410 ACGGAGAACCAAGTGGAGGGTTGAATCCTTTTGGATGGAGTAATCTTGAAGGGTGTTTCC 65469 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||||||||||||| | ||||| | || ||||| || ||||| ||||| || Sbjct 65470 GTCTTCCAATTGTTTGCCAGCAAAAATCAAACGCTGTTGATCTGGTGGAATTCCCTCCTT 65529 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | || ||| ||| | |||||| | || |||||||| || | Sbjct 65530 GTCTTG-AATTTTGGCCTTAACATCTTCAATTCTGTCAGTTGGCTCGACTTCAAGTGTAA 65588 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| | ||| || || || |||||||| Sbjct 65589 TGTGCTTGCCAGTAAGGGTCTTTACGAAAATCTGCAT 65625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385212251608680