Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq187 89.7 5e-13 seq1024 87.8 2e-12 seq959 84.2 2e-11 >seq187 Length=9559 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| || |||| || || |||||||| ||| ||| || Sbjct 4665 CCACCACGGAGACGAAGAACCAAGTGAAGGGTTGAGTCTTTTTGGATGGAGTAGTCTTGA 4606 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||||||||||| ||||| || |||| |||||||| ||||| || || Sbjct 4605 AGGGTGTTTCCATCTTCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGTGGG 4546 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || ||| | | || | |||||| ||||| ||| Sbjct 4545 ATACCTTCCTTGTCTTGGATCTTNGCTTTGACGTCCTCGATACGGTCTGTTGGTTCGACT 4486 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| || | ||| || || | ||||| ||||| ||||||||| Sbjct 4485 TCAAGNGTGATGTGCTTTCCTGTGAGGGTTTTGACGAAGATTTGCATA 4438 >seq1024 Length=37034 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | ||| || || | || || || ||||| ||| ||| || Sbjct 16705 CCACCACGAAGACGAAGAACCAAGTGGAGGGTTGAATCCTTTTGGATGGAGTAGTCTTGG 16764 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | |||||| | ||||||||||||| | || |||||||| ||||| || || Sbjct 16765 AGGGTGTTGCCGTCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGG 16824 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || || ||| | | ||| | |||||| ||||| ||| Sbjct 16825 ATACCTTCTTTGTCTTGGATCTTGGCTTTGACATCTTCGATACGGTCTGTTGGTTCGACT 16884 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||| || || | ||||| ||||| ||||||||| Sbjct 16885 TCGAGGGTGATGTGCTTTCCTGTGAGGGTTTTGACGAAGATTTGCATA 16932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| | ||||||||||||| | || |||||||| ||||| || || || ||||||||| Sbjct 17005 TCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 17064 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || ||||| || | | ||| | ||||| ||||| ||||||| || | Sbjct 17065 TCTTGGATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGATG 17124 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| || || | ||| || ||||| ||||||||| Sbjct 17125 TGCTTTCCTGTGAGTGTCTTAACGAAGATTTGCATA 17160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| | ||||||||||||| | || |||||||| ||||| || || || ||||||||| Sbjct 17233 TCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 17292 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || ||||| || | | ||| | ||||| ||||| ||||||| || | Sbjct 17293 TCTTGGATTTTAGCCTTGACATCTTCGATACGATCTGTTGGTTCGACTTCAAGGGTGATG 17352 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| || || | ||| || ||||| ||||||||| Sbjct 17353 TGCTTTCCTGTGAGTGTCTTAACGAAGATTTGCATA 17388 >seq959 Length=42966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 |||||| | ||||||||| || |||| |||||||| |||||||| || || |||||||| Sbjct 25433 GTCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTT 25374 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| ||||| ||| | | ||| | ||| || ||||| ||||| | || | Sbjct 25373 GTCTTGGATTTTGGCTTTGACATCTTCGATACGGTCGGTTGGTTCGACTTCGAGTGTGAT 25314 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| || || | ||| || ||||| |||||||| Sbjct 25313 GTGCTTTCCAGTGAGTGTCTTGACGAAAATTTGCAT 25278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488534961936000