Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq989 161 2e-34 >seq989 Length=40357 Score = 161 bits (178), Expect = 2e-34 Identities = 349/508 (69%), Gaps = 22/508 (4%) Strand=Plus/Plus Query 304988 AAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAA-TGGGAAAACGTGTTGATTTTAGTGC 305046 ||||||||||| || | | |||||||||| ||| |||||||| | |||||||||||||| Sbjct 3286 AAAGGTAAAGAAGGACATTTTCGAGGTAACTTAAATGGGAAAA-GAGTTGATTTTAGTGC 3344 Query 305047 AAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA 305106 ||| ||| || | || ||| | ||| || || || || | ||||| ||| | || Sbjct 3345 GAGATCTGTTATTTCCCCAGATCCAACAATAAGAATTGATCAAGTTGGAGTCCCAGTCGA 3404 Query 305107 AATTGCTTTAAAACT--AACATTTCCAGAGAAAGTTAACGAGAAAAATATTAAAC--ATT 305162 |||||| |||||| |||||||||||| | ||| ||| ||||||| | | ||| Sbjct 3405 AATTGCG--AAAACTTTAACATTTCCAGAAATAGTAAACTCGAAAAATCG-AGCCGAATT 3461 Query 305163 TGAGACGTTGTGTTCTTAATGGAAATAGCAAGTATCCA-GGTGCTCGTGCTGTTATAAAA 305221 || || || || || | | || | | || ||||| | | |||| | | Sbjct 3462 GGAAACAATGA--TCAAAAATGGACCAGATGCTTTACATGGTGCAAATTATATTATCACA 3519 Query 305222 CACAAGCAAAAGAAGACAATATCTTTGAACCATATC--GATTTAAAACAATTCAGTAAAA 305279 | ||||| | || ||| ||| || || | || || | | ||| | | Sbjct 3520 CCT---CAAAATATGAGAATTGATTTAAAA-ATTGCAAGAGATAGATCCATTTT-TCATT 3574 Query 305280 TGCTTGAAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCA 305339 || ||||| || | || ||| ||||| |||| || ||| ||| | || | Sbjct 3575 TGGATGAAAATACT---ATCGTTGAAAGACACCTGAAGGATGGAGATGTAGTTGTATTTA 3631 Query 305340 ATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTG 305399 | || ||||| ||| ||||||||||||| ||||||| |||| | | || |||| ||| Sbjct 3632 ACAGACAACCTTCATTGCATAAAATGTCAATGATGGGTCATCATGCCATTATATTGCCTG 3691 Query 305400 GATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAG 305459 ||| |||||||||||||||| || | ||| || || || || ||||||||||||| Sbjct 3692 GATCGACATTTCGATTAAATTTATCAGTAACTACTCCATACAACGCAGATTTTGATGGAG 3751 Query 305460 ATGAAATGAATATGCATGTACCTCAATC 305487 ||||||||||||||||||| |||||||| Sbjct 3752 ATGAAATGAATATGCATGTTCCTCAATC 3779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186790295062280