Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq827 86.0 4e-12 seq576 82.4 5e-11 >seq827 Length=184754 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||| | || ||||| |||||||| || |||||| Sbjct 149081 ACCACCACGGAGACGAAGCACAAGGTGGAGAGTTGAATCTTTTTGGATTGAGTAATCTTG 149022 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||| | |||| ||||||||||||||||| || |||||||| || |||||| | || Sbjct 149021 GAGGGTGTTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGG 148962 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||||| | | || | || | |||| ||| ||| | Sbjct 148961 AATTCCTTCCTTGTCTTGGATTTT-GGCCTTGACGTCCTCGATTCTGTCTGTTGGTTCAA 148903 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || | ||| || |||||||||||||| Sbjct 148902 CTTCCAGAGTGATGTGCTTCCCAGTCAGCGTCTTCACAAAGATCTGCAT 148854 >seq576 Length=101662 Score = 82.4 bits (90), Expect = 5e-11 Identities = 165/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 33510 AATAAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTAT 33569 |||||| | | ||| || | | ||| | ||||| || || || || ||||| || Sbjct 65386 AATAAATTAGAAACCGCCACGAAGACGGAGAACCAAGTGGAGGGTTGAATCCTTTTGGAT 65445 Query 33570 GTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTG 33629 | |||||| || ||| | |||| ||||||||||| || ||||||||||||||||| Sbjct 65446 GGAGTAATCTTGAAGGGTGTTTCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGCTG 65505 Query 33630 CTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGT 33688 |||||| | || | || || ||||| |||||| | | ||||| || | ||| Sbjct 65506 TTGATCTGGTGGAATTCCCTCCTTGTCTTGAATTTT-GGCCTTAACATCTTCAATTCTGT 65564 Query 33689 CGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCA 33748 | ||| || || |||| || || || || || | || ||||| || ||||||| Sbjct 65565 CAGTTGGCTCGACTTCAAGTGTAATGTGCTTGCCAGTAAGGGTCTTTACGAAAATCTGCA 65624 Query 33749 TA 33750 || Sbjct 65625 TA 65626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328698071001600