Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1149 82.4 7e-11 >seq1149 Length=154106 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCA-TG- 131959 ||| | ||| | ||| || || | | |||| || ||||||||| |||||| | || Sbjct 60027 ACGAAGGCGAAGAACTAAGTGGAGGGTTGAATCCTTTTGAATGGAGTAGTCTTGAAGTGT 59968 Query 131960 GTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATG 132019 || || |||||||| || || |||| | || ||||| ||||||||||| || || Sbjct 59967 GTTTCCG--TCTTCGAGTTGCTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATT 59910 Query 132020 CCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCG 132079 || || || || || || ||||| | ||| | | ||| || || || |||||| Sbjct 59909 CCCTCCTTGTCTTGGATCTTGGCTTTCACGTCTTCAATACGATCTGTTGGTTCGACTTCG 59850 Query 132080 ACCGTCA-GCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || | | ||||| ||||||| ||||| | |||||||||||| Sbjct 59849 AGGGTGATGTGTTTT-CCAGTCAATGTTTTCACGAAAATCTGCAT 59806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476602382692800