Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1149 87.8 2e-12 seq788 82.4 7e-11 >seq1149 Length=154106 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || |||||||| || |||||| ||||| ||||||||||| ||||| Sbjct 59806 ATGCAGATTTTCGTGAAAACATTGACTGGAAAACACATCACCCTCGAAGTCGAA-CCAAC 59864 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| ||| || | || ||| || || || || ||||| || || || ||||| Sbjct 59865 AGATCGTATTGAAGACGTGAAAGCCAAGATCCAAGACAAGGAGGGAATTCCACCAGATCA 59924 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGA-TGATAGAAATGTCAGCGATTACA 25352 ||| | || |||| || ||| || ||||||||||| || | | | ||| || ||| Sbjct 59925 ACAACGTCTTATTTTCGCCGGAAAGCAACTCGAAGACGGAAACACACTTCA-AGACTACT 59983 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| || || ||| | || ||||| Sbjct 59984 CCATTCAAAAGGATTCAACCCTCCACTTAGT 60014 >seq788 Length=62525 Score = 82.4 bits (90), Expect = 7e-11 Identities = 118/164 (72%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 || || |||||| | || || || ||| | ||||| ||| ||||| ||||||||||| Sbjct 15364 AAGAAAATGCAAATTTTCGTCAAGACACTCACCGGCAAACACATCACACTCGAAGTCGAA 15305 Query 25229 GCCAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 ||||| ||| |||||| | || || || || || || || ||||| || || Sbjct 15304 -CCAACTGATCGTATCGAAGACGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACC 15246 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 25331 ||||| ||| | ||||| | || ||||| ||||||||||||| Sbjct 15245 AGATCAACAACGTCTCATCTTCGCTGGCAAGCAACTCGAAGATG 15202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445086165753600