Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq576 98.7 1e-15 seq176 95.1 1e-14 seq785 91.5 1e-13 seq548 91.5 1e-13 seq1149 87.8 2e-12 seq959 87.8 2e-12 seq716 86.0 6e-12 seq710 86.0 6e-12 seq582 86.0 6e-12 seq788 82.4 8e-11 >seq576 Length=101662 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || |||||||| ||| ||| || || ||||| ||| || | || Sbjct 65422 GTGGAGGGTTGAATCCTTTTGGATGGAGTAATCTTGAAGGGTGTTTCCGTCTTCCAATTG 65481 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 |||||| ||||||||||||||||| ||||| || || || || || || ||||||||||| Sbjct 65482 TTTGCCAGCAAAAATCAAACGCTGTTGATCTGGTGGAATTCCCTCCTTGTCTTGAATTTT 65541 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || | || | | |||| | | || || || || |||||| || || || Sbjct 65542 GGCCTTAACATCTTCAATTCTGTCAGTTGGCTCGACTTCAAGTGTAATGTGCTTGCCAGT 65601 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || |||||||| ||||| Sbjct 65602 AAGGGTCTTTACGAAAATCTGCAT 65625 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/211 (69%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || |||||||||||| |||||| || |||| ||| ||||| || Sbjct 65650 GTGAAGTGTAGAGTCCTTTTGAATGGAGTAGTCCTGAAGTGTGTTTCCGTCTTCGAGTTG 65709 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || || |||||||| || || || || || || || || ||||| || || Sbjct 65710 CTTTCCGGCGAAGATTAAACGCTGTTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATCTT 65769 Query 134630 TTGTTTGA---CCGCG-TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTAC 134685 ||||| || || | | || ||| || ||| || || || || ||| ||| | Sbjct 65770 GGCTTTGACGTCCTCGATACGATCTGTTGG----TTCGACTTCAAGTGTGATGTGTTTTC 65825 Query 134686 CGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 | || | ||| || ||||| |||||||| || Sbjct 65826 CAGTAAGAGTCTTTACGAAGATTTGCATCTT 65856 >seq176 Length=130081 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || | ||| || | ||| ||||| || || || ||||||||||| |||||| Sbjct 85231 TTACCACCACGGAGACGAAGCACAAGGTGGAGAGTTGAGTCCTTTTGAATTGAGTAGTCT 85172 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||||| ||| || | ||||| || || || |||||||| || ||||| || Sbjct 85171 TGGAGGGTGTTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAAACGTTGTTGATCTGGG 85112 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| ||||| ||||| ||||| | || | | |||| | | ||| Sbjct 85111 GGGATTCCTTCTTTGTCTTGGATTTTAGCCTTGACGTCCTCGATTCTGTCTGTTGGTTCA 85052 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||| || || || | || || || || || ||||| Sbjct 85051 ACTTCCAGTGTAATGTGCTTCCCTGTCAGCGTCTTGACAAAGATCTGCAT 85002 >seq785 Length=62999 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || | ||| || | ||| ||||| || || || || ||||| || |||||| Sbjct 32640 TTACCGCCACGGAGACGAAGCACAAGGTGGAGAGTTGAATCTTTTTGGATTGAGTAGTCT 32581 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||||| || || | ||||| || || ||||||||||| || ||||| || Sbjct 32580 TGGAGGGTGTTTCCATCTTCCAATTGTTTTCCGGCGAAAATCAAACGTTGTTGATCTGGT 32521 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| ||||| ||||| ||||| | || | | |||| | | ||| Sbjct 32520 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTGACGTCCTCGATTCTGTCTGTTGGTTCA 32461 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||||||| || || || | || || || || || ||||| Sbjct 32460 ACTTCCAGAGTAATGTGCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 32411 >seq548 Length=109954 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || | ||| || | ||| ||||| || || || ||||||||||| ||| || Sbjct 39702 TTACCACCACGGAGACGAAGCACAAGGTGGAGAGTTGAATCCTTTTGAATTGAGTAATCT 39761 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||||| ||| || | ||||| || || || |||||||| || ||||| || Sbjct 39762 TGGAGGGTGTTGCCGTCTTCCAATTGTTTTCCAGCGAAGATCAAACGTTGTTGATCTGGT 39821 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || ||||| ||||| ||||| | || | |||| | | ||| Sbjct 39822 GGAATTCCTTCCTTGTCTTGGATTTTGGCCTTGACGTCCTCGATGCTGTCTGTTGGTTCA 39881 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||||||| || || || | || || ||||| || ||||| Sbjct 39882 ACTTCCAGAGTAATGTGCTTCCCTGTCAGCGTCTTTACGAAGATCTGCAT 39931 >seq1149 Length=154106 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || |||||||||||| |||||| || |||| ||| ||||| || Sbjct 60009 GTGGAGGGTTGAATCCTTTTGAATGGAGTAGTCTTGAAGTGTGTTTCCGTCTTCGAGTTG 59950 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || ||||| | ||| || ||||| || || || || || || ||||| || || Sbjct 59949 CTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATTCCCTCCTTGTCTTGGATCTT 59890 Query 134630 TTGTTTGACCGCGTCCAATGTG-TCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 ||| | || | |||| | || | | ||| || ||||| || ||| ||| || | Sbjct 59889 GGCTTTCA-CGTCTTCAATACGATCTGTTGGTTCGACTTCGAGGGTGATGTGTTTTCCAG 59831 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| |||||||| ||||| Sbjct 59830 TCAATGTTTTCACGAAAATCTGCAT 59806 >seq959 Length=42966 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || || |||||| | || | ||| || Sbjct 25486 ACGAGGTGAAGTGTTGAGTCCTTCTGGATTGAGTAGTCTTGGAGTGTATTTCCGTCTTCT 25427 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 | ||||| || || || || | ||| || |||||||| || || |||||||| ||||| Sbjct 25426 AATTGTTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCTTTGTCTTGG 25367 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| |||||| | || | ||||| | ||| || ||||| || ||| || Sbjct 25366 ATTTTGGCTTTGACATCTTCGATACGGTCGGTTGGTTCGACTTCGAGTGTGATGTGCTTT 25307 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715 || || | || || |||||||||||||||| Sbjct 25306 CCAGTGAGTGTCTTGACGAAAATTTGCATTT 25276 >seq716 Length=195740 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || |||||||||||| ||| || || |||| || ||| Sbjct 164632 ACAAGGTGGAGTGTTGAGTCCTTTTGAATGGAGTAATCTTGAAGAGTGTTTCCATCTTCG 164573 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || || ||||| ||||| || || || || || || ||||| || |||||| Sbjct 164572 AGTTGCTTTCCAGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTATCTTGA 164513 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| ||||| | || | ||||| | ||| || || || || || || Sbjct 164512 ATTTTGGCCTTGACATCTTCGATACGGTCGGTTGGTTCGACTTCAAGTGTGATATGCTTG 164453 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || | ||||| ||||| ||||||||| Sbjct 164452 CCTGTGAGTGTTTTCACGAAGATTTGCATT 164423 >seq710 Length=73582 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || || || || || |||||||| |||||| | ||||| Sbjct 11814 AGACGAAGCACAAGATGAAGGGTCGAATCTTTTTGAATTGAGTAGTCTTGGAGGGTGTTT 11755 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||| |||||||| ||||||||||| ||||| || || || ||||| Sbjct 11754 CCATCCTCTAATTGTTTTCCTGCAAATATCAAACGCTGTTGATCAGGGGGAATTCCTTCC 11695 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTG-TCGGACGATTCCACGTCGAGAGT 134674 || || || || || |||||| | | ||||| | || | | || || || || || Sbjct 11694 TTGTCCTGGATCTTAGCTTTGACGTCCT-CAATGCGATCTGTTGGCTCGACCTCAAGCGT 11636 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| || || || | ||| ||||| || |||||||| Sbjct 11635 AATGTGCTTCCCAGTCAGAGTCTTAACAAAGATTTGCAT 11597 >seq582 Length=225330 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || | ||| || | |||||||| ||||| || || || ||||| || || Sbjct 127371 TTACCGCCGCGGAGACGAAGAACGAGGTGAAGCGTAGAGTCTTTCTGAATTGAATAATCT 127312 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || ||||| || || | ||||| |||||||| ||||||||||| ||||| || Sbjct 127311 TGAAGGGTGTTTCCATCCTCCAATTGTTTTCCTGCAAATATCAAACGCTGTTGATCAGGA 127252 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTG-TCGGACGATTC 134662 || || ||||| || || || || || ||||| | | ||||| | || | | || Sbjct 127251 GGAATTCCTTCCTTATCCTGGATCTTAGCCTTGACGTCCT-CAATGCGATCTGTGGGCTC 127193 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | ||| || ||||| |||||||| Sbjct 127192 GACCTCAAGCGTAATATGCTTTCCGGTCAGAGTCTTCACGAAGATTTGCAT 127142 >seq788 Length=62525 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || || ||||| || |||| || ||| Sbjct 15150 ACGAGGTGAAGTGTTGAGTCCTTCTGGATTGAATAGTCTTGAAGTGTGTTTCCATCTTCG 15209 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || ||||| || || || | ||| || ||||| || || || ||||| || ||||| Sbjct 15210 AGTTGCTTGCCAGCGAAGATGAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGG 15269 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| | || | || | | ||| || ||||| || ||| ||| Sbjct 15270 ATCTTGGCCTTGACGTCTTCGATACGATCAGTTGGTTCGACTTCGAGTGTGATGTGTTTG 15329 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719 ||||| | || || ||||||||||||||||| || Sbjct 15330 CCGGTGAGTGTCTTGACGAAAATTTGCATTTTCTT 15364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505389050129600