Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq422 125 1e-23 >seq422 Length=116156 Score = 125 bits (138), Expect = 1e-23 Identities = 285/429 (66%), Gaps = 0/429 (0%) Strand=Plus/Plus Query 161107 CCTCCACTACGGGGATTTGACTGACTCCCTGAACATAGTCTCTATCATTAAGGAAGTAGA 161166 |||||||||||| ||| | || ||||| || | || ||| || || | | || | Sbjct 91572 CCTCCACTACGGCGATCTTACCGACTCGATGTCCTTAACCTCGATTATCCAAGCTGTCCA 91631 Query 161167 ACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACC 161226 || || || ||||||||||| | || ||| ||||| ||||| || ||||| || Sbjct 91632 GCCAGACGAAATCTACAACCTCGCTGCTATGAGCCATGTCAAAGTTTCCTTCGACACCCC 91691 Query 161227 TGAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCT 161286 ||||| ||||| | |||| | | |||||||| || |||||||||| | | | Sbjct 91692 CGAATACACAGCCAACGCTGACGGCATAGGAACCCTTCGAATATTGGAGGCCATCAGATT 91751 Query 161287 CCTAGGTATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTT 161346 |||| | || | | || | || ||||| || || || | || || || Sbjct 91752 ATTAGGCCTTACTCACAAAACACGATTTTATCAGGCTTCAACATCAGAACTCTACGGTTT 91811 Query 161347 GGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGT 161406 || ||||| |||||||| |||||||| || ||||| ||| |||| || || | | Sbjct 91812 AGTCCAAGAAGTTCCACAGAAGGAAACAACTCCATTCTATCCAAGATCGCCTTACGCCTG 91871 Query 161407 AGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGC 161466 || || || |||| |||||||| | ||||| |||| ||||| ||||| || Sbjct 91872 CGCCAAGCTTTATGCTTATTGGATCACAGTAAACTATCGAGAAGCATATGGAATGCATGC 91931 Query 161467 CAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCG 161526 || || ||| | ||||||||||| || || | || ||||| || || || ||| | Sbjct 91932 ATCTAACGGCATTTTGTTCAACCATGAATCTCCGCTTCGCGGTGAAACATTTGTGACCAG 91991 Query 161527 TAAGATTAC 161535 ||||| || Sbjct 91992 GAAGATCAC 92000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729916096302400