Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1024 100 2e-16 seq187 96.9 3e-15 seq576 93.3 4e-14 seq1149 89.7 4e-13 seq785 82.4 6e-11 >seq1024 Length=37034 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCA---TGTTGCGCTCGTCT 27095 ||||| || | || ||||| ||||| || |||||| | |||||| ||||| Sbjct 17407 ACCAAGTGGAGGGTTGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTGC---CGTCT 17463 Query 27096 TCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCG 27155 || | |||||||| ||| | || ||||| |||||||| || || | ||| ||||| || Sbjct 17464 TCTAATTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCT 17523 Query 27156 GCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGAT 27215 ||||||| ||| | | || | | |||||| | ||| ||||| || || || | Sbjct 17524 TGGATCTTGGCTTTGACGTCCTCGATACGGTCTGTTGGTTCGACTTCGAGGGTGATGTGT 17583 Query 27216 TTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || ||||| || ||||||||||| Sbjct 17584 TTGCCTGTGAGGGTTTTGACGAAGATTTGCAT 17615 Score = 93.3 bits (102), Expect = 4e-14 Identities = 121/167 (72%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 27082 TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCA 27141 |||||| ||||||| | |||||||| || |||||||||| |||||||| || || | Sbjct 16769 TGTTGC---CGTCTTCTAATTGTTTACCAGCAAAAATGAGACGTTGTTGATCTGGTGGGA 16825 Query 27142 CACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTT 27201 ||| ||||| || ||||||| ||| | ||| | | |||||| | ||| |||| Sbjct 16826 TACCTTCTTTGTCTTGGATCTTGGCTTTGACATCTTCGATACGGTCTGTTGGTTCGACTT 16885 Query 27202 CTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || || || || ||||| || |||||||||||| Sbjct 16886 CGAGGGTGATGTGCTTTCCTGTGAGGGTTTTGACGAAGATTTGCATA 16932 >seq187 Length=9559 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCA---TGTTGCGCTCGTCTTCGAGCTGTTTA 27107 |||||||| ||||| || |||||| | |||||| |||||||||| || ||| Sbjct 4407 GTAGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTGC---CGTCTTCGAGTTGCTTA 4351 Query 27108 CCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTT 27167 |||||| | || ||||| |||||||| || || | ||| || || || |||||| | Sbjct 4350 CCGGCGAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGATCTTAGCT 4291 Query 27168 TTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGA 27227 || | | || | | |||||| | ||| ||||| || || || ||||| || || Sbjct 4290 TTGACGTCCTCGATACGGTCTGTTGGTTCGACTTCGAGGGTGATGTGCTTGCCTGTAAGG 4231 Query 27228 GTTTTCACAAAGATTTGCAT 27247 || || |||||||||||||| Sbjct 4230 GTCTTAACAAAGATTTGCAT 4211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || ||||||||||| || |||||| | | || | |||||| Sbjct 4647 ACCAAGTGAAGGGTTGAGTCTTTTTGGATGGAGTAGTCTTGAAGGGTGTTTCCATCTTCG 4588 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || ||||||||| | || ||||| |||||||| || || | ||| || || || | Sbjct 4587 AGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGG 4528 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | || | | |||||| | ||| ||||| || || || || Sbjct 4527 ATCTTNGCTTTGACGTCCTCGATACGGTCTGTTGGTTCGACTTCAAGNGTGATGTGCTTT 4468 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || ||||| || |||||||||||| Sbjct 4467 CCTGTGAGGGTTTTGACGAAGATTTGCATA 4438 >seq576 Length=101662 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACC 27109 |||||||| |||||||| |||||| || | || || |||||||||| || || || Sbjct 65657 GTAGAGTCCTTTTGAATGGAGTAGTC-CTGAAGTGTGTTTCCGTCTTCGAGTTGCTTTCC 65715 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | || | ||||||||| || || || | ||||| || || ||||||| ||| Sbjct 65716 GGCGAAGATTAAACGCTGTTGGTCTGGTGGAATTCCCTCCTTGTCTTGGATCTTGGCTTT 65775 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | | ||||| | ||| ||||| || || || ||| || || ||||| Sbjct 65776 GACGTCCTCGATACGATCTGTTGGTTCGACTTCAAGTGTGATGTGTTTTCCAGTAAGAGT 65835 Query 27230 TTTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 65836 CTTTACGAAGATTTGCAT 65853 >seq1149 Length=154106 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 |||||||||| || || |||||| |||| ||||| |||||||| || || | ||||| | Sbjct 59734 CGTCTTCGAGTTGCTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATTCCCTCCT 59675 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || ||||||| ||||| | ||| | | ||||| | ||| ||||| || || | Sbjct 59674 TGTCTTGGATCTTGGCTTTCACGTCTTCAATACGATCTGTTGGTTCGACTTCGAGGGTGA 59615 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || || || || ||||||||||| Sbjct 59614 TGTGCTTTCCAGTAAGGGTCTTTACGAAGATTTGCAT 59578 >seq785 Length=62999 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| |||||| |||| | ||| |||||||| || || | || ||||| Sbjct 32565 TCTTCCAATTGTTTTCCGGCGAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTG 32506 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | ||||||| | ||||||||| ||||| || Sbjct 32505 TCTTGGATTTTGGCCTTGACGTCCTCGATTCTGTCTGTTGGTTCAACTTCCAGAGTAATG 32446 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || ||||||||||| ||||| Sbjct 32445 TGCTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 32411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424926735245760