Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq671 86.0 3e-12 >seq671 Length=202852 Score = 86.0 bits (94), Expect = 3e-12 Identities = 229/347 (66%), Gaps = 5/347 (1%) Strand=Plus/Plus Query 64898 CCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAGATAGGC 64957 || ||||| || || ||||||| | || ||| |||||||||||| |||| | |||| Sbjct 117107 CCGATACCATTGGAACCATTTACAAGAACCATTGGAATAATTGGTACATAGTATTTAGGT 117166 Query 64958 TCAACAATGAGACCATCATCATCCAAATACTTCAA-AATGGCATCATCCTCTTTTGGAAA 65016 |||| | ||| |||||| | ||| ||||| || |||||| ||||| |||| Sbjct 117167 TCAATTGGAATACCTTCATCAGTGAGATA-TTCAAGAAGTTGATCATCGTCTTTATGAAA 117225 Query 65017 TATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTGGTCTTG 65076 |||| ||| || |||| | | |||| |||||||| | ||| | |||| Sbjct 117226 GATAGCACGGGTAATTTGGGATAGTCGAGTGTAAATATAACGGGGTGATCCTGCATCTTC 117285 Query 65077 TCCAGTTCG---TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGA 65133 ||| || || || ||||| |||||| ||| || | |||||| ||||||| Sbjct 117286 ACCACCACGATTTCTTGAGCCAAATTGACCAGATGGATAGAAAAGATTAATGTTGTTTGT 117345 Query 65134 ACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATG 65193 ||||| ||| || |||||| | || || | | || | | ||||||| || || Sbjct 117346 ACCAACAAATGCTTGTGCCATTGCAATGATGGTTTGGTTAAGAGAATCTTCACCATGGTG 117405 Query 65194 ATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTA 65240 ||| | || ||||| || || | || || ||| |||| |||| Sbjct 117406 ATAGGCAGATTGTTCGGAAACTTTACCTGCAAGCTGAACAACCTTTA 117452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235675748922000