Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq576 96.9 2e-15 seq1149 93.3 3e-14 >seq576 Length=101662 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | ||||| ||||| || |||||||| ||| |||||| | Sbjct 65399 CCGCCACGAAGACGGAGAACCAAGTGGAGGGTTGAATCCTTTTGGATGGAGTAATCTTGA 65458 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||||||| | |||||| || ||||| || ||||||||||| || || || Sbjct 65459 AGGGTGTTTCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGCTGTTGATCTGGTGGA 65518 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC--TTCGCTCTCC 34656 | ||||||||||||| ||| ||| | ||||| | |||| |||| || | ||| Sbjct 65519 ATTCCCTCCTTGTCT-TGAATTTTGGCCTTAACATCTTCAATTCTGTCAGTTGG--CTCG 65575 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || || || || | || || || ||||||||||| Sbjct 65576 ACTTCAAGTGTAATGTGCTTGCCAGTAAGGGTCTTTACGAAAATCTGCAT 65625 Score = 96.9 bits (106), Expect = 2e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || || || || || |||||||||||| || || | Sbjct 65627 CCGCCACGAAGACGAAGGACTAAGTGAAGTGTAGAGTCCTTTTGAATGGAGTAGTCCTGA 65686 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| ||||||| ||||| || ||||| || ||||||||||||||||| || || Sbjct 65687 AGTGTGTTTCCGTCTTCGAGTTGCTTTCCGGCGAAGATTAAACGCTGTTGGTCTGGTGGA 65746 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||||| |||||| Sbjct 65747 ATTCCCTCCTTGTCTTGGATCTT 65769 >seq1149 Length=154106 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || || ||||| || |||||||||||| || ||| | Sbjct 60032 CCACCACGAAGGCGAAGAACTAAGTGGAGGGTTGAATCCTTTTGAATGGAGTAGTCTTGA 59973 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| ||||||| ||||| || ||||| || || | ||| ||||| || || || Sbjct 59972 AGTGTGTTTCCGTCTTCGAGTTGCTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGA 59913 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCT-TCGCTCTCCA 34657 | ||||||||||||| |||| || | ||| ||| | ||| ||| | | | || | Sbjct 59912 ATTCCCTCCTTGTCTTGGATC-TTGGCTTTCACGTCTTCAATACGATCTGTTGGT-TCGA 59855 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||| || || || |||||||| ||||||||||| Sbjct 59854 CTTCGAGGGTGATGTGTTTTCCAGTCAATGTTTTCACGAAAATCTGCAT 59806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314723923064840