Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq576 111 1e-19 seq1024 98.7 7e-16 seq1149 93.3 3e-14 seq959 93.3 3e-14 seq187 86.0 4e-12 seq827 84.2 1e-11 >seq576 Length=101662 Score = 111 bits (122), Expect = 1e-19 Identities = 155/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || || || ||||| || | || Sbjct 65625 ATGCAGATTTTCGTAAAGACCCTTACTGGCAAGCACATTACACTTGAAGTCGAGCCAACT 65566 Query 23671 GACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||| ||||| || |||| | |||| || ||||| || || | || |||||||| Sbjct 65565 GACAGAATTGAAGATGTTAAGGCCAAAA-TTCAAGACAAGGAGGGAATTCCACCAGATCA 65507 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTAC 23787 ||||||||| || ||||| ||||||||| ||||||||| ||| | ||| | |||||| Sbjct 65506 ACAGCGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGAAACACCCTTCA--AGATTAC 65449 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| || || || | || || ||| Sbjct 65448 TCCATCCAAAAGGATTCAACCCTCCACTTGGTT 65416 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/228 (70%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 23595 CAATTAATTACTTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTC 23653 || || ||| ||||| ||||| || ||||| || || || || |||||| ||||| | Sbjct 65870 CATTTCATTTTTTAAAGATGCAAATCTTCGTAAAGACTCTTACTGGAAAACACATCACAC 65811 Query 23654 TCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAG 23713 | ||||| || | || || | | || | ||| || || ||||| || | Sbjct 65810 TTGAAGTCGAACCAACAGATCGTATCGAGGACGTCAAAGCCAAGATCCAAGACAAGGAGG 65751 Query 23714 GTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACG 23771 | | || ||||| |||||||||||||| || ||||| || ||||| ||||||| ||| Sbjct 65750 GAATTCCACCAGACCAACAGCGTTTAATCTTCGCCGGAAAGCAACTCGAAGACGGAAACA 65691 Query 23772 CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || ||| ||| ||||| || || ||| | || ||||| Sbjct 65690 CACTTCAG--GACTACTCCATTCAAAAGGACTCTACACTTCACTTAGT 65645 >seq1024 Length=37034 Score = 98.7 bits (108), Expect = 7e-16 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| ||||| ||||| |||||||| || | || Sbjct 16931 ATGCAAATCTTCGTCAAAACCCTCACAGGAAAGCACATCACCCTCGAAGTCGAACCAACA 16872 Query 23671 GACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | | ||| || | ||| | || | | |||||||||||| | || |||||||| Sbjct 16871 GACCGTATCGAAGATGTCAAAGCCAAGA-TCCAAGACAAAGAAGGTATCCCACCAGATCA 16813 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG 23767 ||| ||| | || ||||| || |||||| | ||||||| Sbjct 16812 ACAACGTCTCATTTTTGCTGGTAAACAATTAGAAGACG 16775 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| || ||| ||||| |||||||| || | || Sbjct 17615 ATGCAAATCTTCGTCAAAACCCTCACAGGCAAACACATCACCCTCGAAGTCGAACCAACA 17556 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | ||| || || |||||||||||| | || ||||||||| Sbjct 17555 GACCGTATCGAGGACGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGATCAA 17496 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG 23767 || ||| | || || || || |||||| | ||||||| Sbjct 17495 CAACGTCTTATCTTCGCTGGTAAACAATTAGAAGACG 17459 >seq1149 Length=154106 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| | || |||||| ||||| |||||||| || | || Sbjct 59806 ATGCAGATTTTCGTGAAAACATTGACTGGAAAACACATCACCCTCGAAGTCGAACCAACA 59865 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || | ||||| | ||| || || ||||| || || | || ||||||||| Sbjct 59866 GATCGTATTGAAGACGTGAAAGCCAAGATCCAAGACAAGGAGGGAATTCCACCAGATCAA 59925 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTACA 23788 || ||| | || || ||||| || ||||| ||||||| ||| ||||| | || ||| Sbjct 59926 CAACGTCTTATTTTCGCCGGAAAGCAACTCGAAGACGGAAACACACTTCA--AGACTACT 59983 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| || || || | || |||||| Sbjct 59984 CCATTCAAAAGGATTCAACCCTCCACTTAGTT 60015 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 23595 CAATTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCT 23654 || || ||| || | ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 59562 CATTTCATTTTTTTAGATGCAAATCTTCGTAAAGACCCTTACTGGAAAGCACATCACCCT 59621 Query 23655 CGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGG 23714 |||||| || | || || | ||||| | ||| || || ||||| || || Sbjct 59622 CGAAGTCGAACCAACAGATCGTATTGAAGACGTGAAAGCCAAGATCCAAGACAAGGAGGG 59681 Query 23715 TGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGC 23772 | || ||||||||||| ||| | || || ||||| || ||||| ||||||| ||| | Sbjct 59682 AATTCCACCAGATCAACAACGTCTTATTTTCGCCGGAAAGCAACTCGAAGACGGAAACAC 59741 Query 23773 ACTT-TAGGCGATTACAACATACAAAAAGAGTCCACA 23808 |||| || | ||| || || || ||||| |||||| Sbjct 59742 ACTTCAAGACTATT-CA--ATCCAGAAAGATTCCACA 59775 >seq959 Length=42966 Score = 93.3 bits (102), Expect = 3e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 ||||||| |||||||| || || ||||| ||||| ||||| |||||||| || | | Sbjct 25276 AAATGCAAATTTTCGTCAAGACACTCACTGGAAAGCACATCACACTCGAAGTCGAACCAA 25335 Query 23669 CGGACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||| | | ||| || | ||| | |||| | ||||||||||| | || || ||| Sbjct 25336 CCGACCGTATCGAAGATGTCAAAGCCAAAA-TCCAAGACAAAGAAGGAATTCCACCCGAT 25394 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG 23767 ||||| ||| | || || ||||| |||||| | ||||||| Sbjct 25395 CAACAACGTCTCATCTTCGCCGGTAAACAATTAGAAGACG 25434 >seq187 Length=9559 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| ||||| ||||| || ||||| || | || Sbjct 4439 ATGCAAATCTTCGTCAAAACCCTCACAGGAAAGCACATCACNCTTGAAGTCGAACCAACA 4498 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | ||| || || ||||| |||||| | || ||||||||| Sbjct 4499 GACCGTATCGAGGACGTCAAAGCNAAGATCCAAGACAAGGAAGGTATCCCACCAGATCAA 4558 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTACA 23788 || ||| | || || ||||| || ||||| ||||| | ||| | ||| | || ||| Sbjct 4559 CAACGTCTTATCTTCGCCGGTAAGCAACTCGAAGATGGAAACACCCTTCA--AGACTACT 4616 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| |||||||| || || | || || ||| Sbjct 4617 CCATCCAAAAAGACTCAACCCTTCACTTGGTT 4648 >seq827 Length=184754 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCAC-GGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||| || || || || || || ||||| || |||||||| |||||||| | || Sbjct 148854 ATGCAGATCTTTGTGAAGACGCTGACTGGGAAGCAC-ATCACTCTGGAAGTTGAACCAAC 148912 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||| | || | || ||||| ||||| ||||| | || |||||||| Sbjct 148913 AGACAGAATCGAGGACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCA 148972 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || ||||| |||||| ||||||||| | ||| | |||||| Sbjct 148973 ACAACGTTTGATCTTCGCCGGAAAACAATTGGAAGACGGAAACACCCTCCAAGATTACTC 149032 Query 23790 CATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 149033 AATCCAAAAAGATTCAAC 149050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338003503151840