Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tritrichomonas_20foetus_20[genbank_20GCA_5F001839685.1_202016-10-25] 1,480 sequences; 67,585,742 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq716 89.7 1e-12 seq827 86.0 1e-11 seq187 86.0 1e-11 >seq716 Length=195740 Score = 89.7 bits (98), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || || || ||||| ||| |||||| | ||| | |||||| Sbjct 164635 AGAACAAGGTGGAGTGTTGAGTCCTTTTGAATGGAGTAATCTTGAAGAGTGTTTCCATCT 164576 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || ||||| || | | || ||||| | | ||||||||||| | Sbjct 164575 TCGAGTTGCTTT--CCAGCGAAAATTAAACGTTGTTGGTCTGGTGGAATTCCTTCCTTAT 164518 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||||||||| |||||| || | | ||| | || |||||||| || ||| Sbjct 164517 CTTGAATTTTGGCCTTGACATCTTCGATACGGTCGGTTGGTTCGACTTCAAGTGTGATAT 164458 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| ||||| || |||||||||| |||||| Sbjct 164457 GCTTGCCTGTGAGTGTTTTCACGAAGATTTGCATT 164423 >seq827 Length=184754 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || ||||| || ||||||||||| |||||| | || | || ||| Sbjct 149065 AGCACAAGGTGGAGAGTTGAATCTTTTTGGATTGAGTAATCTTGGAGGGTGTTTCCGTCT 149006 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| ||||||||||| | | || || || | | ||||||||||| ||| Sbjct 149005 TCCAATTGTTTTCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCT 148946 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||||| ||| | ||||||| || ||||| ||||| || Sbjct 148945 TGGATTTTGGCCTTGACGTCCTCGATTCTGTCTGTTGGTTCAACTTCCAGAGTGATGTGC 148886 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| |||| |||||| Sbjct 148885 TTCCCAGTCAGCGTCTTCACAAAGATCTGCAT 148854 >seq187 Length=9559 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| ||||| ||||| || ||||||||| ||| || | || | || ||| Sbjct 4422 AGGACAAGGTGAAGTGTAGAGTCCTTTTGGATGGAGTAGTCTTGGAGGGTGTTGCCGTCT 4363 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || |||||||||||||| | || || || | | ||| |||||||| ||| Sbjct 4362 TCGAGTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCT 4303 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| ||| | | ||||| || ||||| || || || Sbjct 4302 TGGATCTTAGCTTTGACGTCCTCGATACGGTCTGTTGGTTCGACTTCGAGGGTGATGTGC 4243 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || ||||| || |||| ||||| || Sbjct 4242 TTGCCTGTAAGGGTCTTAACAAAGATTTGCATCTT 4208 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || |||||||||||| ||| || | || | |||||||| | Sbjct 4645 CAAG-TGAAGGGTTGAGTCTTTTTGGATGGAGTAGTCTTGAAGGGTGTTTCCATCTTCGA 4587 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || |||||||||||||| | || || || | | ||| |||||||| ||||| | Sbjct 4586 GTTGCTTACCGGCGAAGATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGA 4527 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| ||| | | ||||| || |||||||| || || || | Sbjct 4526 TCTTNGCTTTGACGTCCTCGATACGGTCTGTTGGTTCGACTTCAAGNGTGATGTGCTTTC 4467 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || || ||||||| ||||| Sbjct 4466 CTGTGAGGGTTTTGACGAAGATTTGCAT 4439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153798920673080