Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq23 390 4e-105 >seq23 Length=2828041 Score = 390 bits (432), Expect = 4e-105 Identities = 649/927 (70%), Gaps = 38/927 (4%) Strand=Plus/Minus Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61 |||| ||||||| ||||| || ||||| |||| || ||||| | |||||||| || | Sbjct 1563497 GCAGGTCAAGGCGAAGATACTGGAGCGCATGGCCGAGTGGACCAACATGTTCGCTAGCGA 1563438 Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121 || || || || |||||| |||||| || ||| ||| |||||||| ||| || Sbjct 1563437 TCCCGACCTGGGAATCATGTCTGGCGCCTATCAGAAGCTCAAGTCACAAAGTACGTTGGA 1563378 Query 122 TCAACTCTGGTTCGTTGGGAGCAC-TGACCAACGTGTTGTAGACCCTAACCTGCGACCTC 180 | | | | | | | ||| | | ||| || |||||| ||||| ||| | | Sbjct 1563377 G-AGGTATCGGTACT---GCGCATGTTGCTAACAAGTCCCAGACCCCAACCTCCGAGCGC 1563322 Query 181 CGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGC 240 | || || || || ||||| |||||| | ||| |||||||| |||||||| ||||||| Sbjct 1563321 CCTCCAAGCCACAAAAGACGCAGATCTCCGACGTCGACCGCCAAAAGGAAGAAGAGGAGC 1563262 Query 241 TACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGC-----GGGACCGAGCCATCCGCCGC 295 |||| |||||||| || | || | | || || || ||| |||| | || || Sbjct 1563261 TACAAATGGCGCTTGCCATGTCGAT--ACGAGAGTCCAAAGGTGCCGCGCCAACGGCTGC 1563204 Query 296 CAGGTCCAA---CCAGCCGCAAGCAAAAGCCCCAC--AACAATCCGCCCCGGAACAAGAG 350 || |||||| || | ||| | | | | | | | || |||| ||||| | Sbjct 1563203 CAAGTCCAATACCCCTCAGCAGGGCGGATCTGCTCCTAGCGCTCAGCCC--GAACA---G 1563149 Query 351 CAGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTT 410 | |||| | | | || || || || || || |||||||| || || || ||||| Sbjct 1563148 CCTTCTCAACCCCTACCGTCAGGCACAACTGCGGCAACCGTCTCACGTGTGCGAGCCCTC 1563089 Query 411 TACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCG 470 | |||||| ||| ||||| ||||| || | || ||||| ||||| || |||||| Sbjct 1563088 TTCGACTTTCAGCCATCGGAGCCCGGTGAACTACAGTTTCGCAAGGGCGATATCATTGCG 1563029 Query 471 GTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATC 530 || ||||| || ||||||||||| ||||||||||| || || ||||| ||||| || ||| Sbjct 1563028 GTCCTCGAATCAGTGTACAAGGATTGGTGGAAGGGATCGCTACGTGGGCAGACGGGTATC 1562969 Query 531 TTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAA 590 ||||| |||||||| || ||||| |||| ||||| || |||||||| ||||| ||| Sbjct 1562968 TTCCCGCTCAACTACGTGGAGAAATTGCAAGATCCGACACGCGAGGAGCTTGAGAGGGAA 1562909 Query 591 GCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTG 650 || || | ||||| || |||||||| |||| | ||||||||||||| | || || || Sbjct 1562908 GCACAAAACGAGGCTGAGGTCTTTGCACAGATAAGGAACGTGGAGAAGTTACTGGCACTC 1562849 Query 651 CTGAGCACTAGTTC---------GAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCG 701 ||||||||||| || ||| ||| || | ||||| ||||| ||||| | Sbjct 1562848 CTGAGCACTAGCTCACAGCCAGGTGGTGGCGATGCGCGAGACAACGAGGAAATCACAGAG 1562789 Query 702 CTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCG 761 || || ||| ||| | | || || ||||| |||| ||||| ||||| ||||| ||| Sbjct 1562788 CTCTATCACTCGACGCTAGCTATCCGACCGAAACTGATTGAGCTTATTGGAAAGTACTCG 1562729 Query 762 CAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTG-TG-TTGGCCACTGATCGTGT 819 || ||||||||||||| || | | || | || || || | || |||| | | Sbjct 1562728 CAGAAGAAGGGTAAGTCAAA---TATGAGCAGAGTTATGATGATCAGCGGCTGA--CTTT 1562674 Query 820 TCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAAC 879 |||||| || || ||| | |||||||||||||||||||| ||||| ||||||||| | Sbjct 1562673 AGTAGATGACTTTACACAGTTGAACGAGAAGTTCATCAAGGCTCGCCGAGACTACGAAGC 1562614 Query 880 CCTCCTTGAAGCCTCGATGTCGCAACC 906 | | || ||||| || ||||| ||||| Sbjct 1562613 CATGCTGGAAGCATCCATGTCCCAACC 1562587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945595291065