Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1 390 4e-105 >seq1 Length=2771824 Score = 390 bits (432), Expect = 4e-105 Identities = 649/927 (70%), Gaps = 38/927 (4%) Strand=Plus/Plus Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61 |||| ||||||| ||||| || ||||| |||| || ||||| | |||||||| || | Sbjct 1234057 GCAGGTCAAGGCGAAGATACTGGAGCGCATGGCCGAGTGGACCAACATGTTCGCTAGCGA 1234116 Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121 || || || || |||||| |||||| || ||| ||| |||||||| ||| || Sbjct 1234117 TCCCGACCTGGGAATCATGTCTGGCGCCTATCAGAAGCTCAAGTCACAAAGTACGTTGGA 1234176 Query 122 TCAACTCTGGTTCGTTGGGAGCAC-TGACCAACGTGTTGTAGACCCTAACCTGCGACCTC 180 | | | | | | | ||| | | ||| || |||||| ||||| ||| | | Sbjct 1234177 G-AGGTATCGGTACT---GCGCATGTTGCTAACAAGTCCCAGACCCCAACCTCCGAGCGC 1234232 Query 181 CGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGC 240 | || || || || ||||| |||||| | ||| |||||||| |||||||| ||||||| Sbjct 1234233 CCTCCAAGCCACAAAAGACGCAGATCTCCGACGTCGACCGCCAAAAGGAAGAAGAGGAGC 1234292 Query 241 TACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGC-----GGGACCGAGCCATCCGCCGC 295 |||| |||||||| || | || | | || || || ||| |||| | || || Sbjct 1234293 TACAAATGGCGCTTGCCATGTCGAT--ACGAGAGTCCAAAGGTGCCGCGCCAACGGCTGC 1234350 Query 296 CAGGTCCAA---CCAGCCGCAAGCAAAAGCCCCAC--AACAATCCGCCCCGGAACAAGAG 350 || |||||| || | ||| | | | | | | | || |||| ||||| | Sbjct 1234351 CAAGTCCAATACCCCTCAGCAGGGCGGATCTGCTCCTAGCGCTCAGCCC--GAACA---G 1234405 Query 351 CAGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTT 410 | |||| | | | || || || || || || |||||||| || || || ||||| Sbjct 1234406 CCTTCTCAACCCCTACCGTCAGGCACAACTGCGGCAACCGTCTCACGTGTGCGAGCCCTC 1234465 Query 411 TACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCG 470 | |||||| ||| ||||| ||||| || | || ||||| ||||| || |||||| Sbjct 1234466 TTCGACTTTCAGCCATCGGAGCCCGGTGAACTACAGTTTCGCAAGGGCGATATCATTGCG 1234525 Query 471 GTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATC 530 || ||||| || ||||||||||| ||||||||||| || || ||||| ||||| || ||| Sbjct 1234526 GTCCTCGAATCAGTGTACAAGGATTGGTGGAAGGGATCGCTACGTGGGCAGACGGGTATC 1234585 Query 531 TTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAA 590 ||||| |||||||| || ||||| |||| ||||| || |||||||| ||||| ||| Sbjct 1234586 TTCCCGCTCAACTACGTGGAGAAATTGCAAGATCCGACACGCGAGGAGCTTGAGAGGGAA 1234645 Query 591 GCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTG 650 || || | ||||| || |||||||| |||| | ||||||||||||| | || || || Sbjct 1234646 GCACAAAACGAGGCTGAGGTCTTTGCACAGATAAGGAACGTGGAGAAGTTACTGGCACTC 1234705 Query 651 CTGAGCACTAGTTC---------GAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCG 701 ||||||||||| || ||| ||| || | ||||| ||||| ||||| | Sbjct 1234706 CTGAGCACTAGCTCACAGCCAGGTGGTGGCGATGCGCGAGACAACGAGGAAATCACAGAG 1234765 Query 702 CTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCG 761 || || ||| ||| | | || || ||||| |||| ||||| ||||| ||||| ||| Sbjct 1234766 CTCTATCACTCGACGCTAGCTATCCGACCGAAACTGATTGAGCTTATTGGAAAGTACTCG 1234825 Query 762 CAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTG-TG-TTGGCCACTGATCGTGT 819 || ||||||||||||| || | | || | || || || | || |||| | | Sbjct 1234826 CAGAAGAAGGGTAAGTCAAA---TATGAGCAGAGTTATGATGATCAGCGGCTGA--CTTT 1234880 Query 820 TCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAAC 879 |||||| || || ||| | |||||||||||||||||||| ||||| ||||||||| | Sbjct 1234881 AGTAGATGACTTTACACAGTTGAACGAGAAGTTCATCAAGGCTCGCCGAGACTACGAAGC 1234940 Query 880 CCTCCTTGAAGCCTCGATGTCGCAACC 906 | | || ||||| || ||||| ||||| Sbjct 1234941 CATGCTGGAAGCATCCATGTCCCAACC 1234967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945572792820