Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq1 390 4e-105
>seq1
Length=2771824
Score = 390 bits (432), Expect = 4e-105
Identities = 649/927 (70%), Gaps = 38/927 (4%)
Strand=Plus/Plus
Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61
|||| ||||||| ||||| || ||||| |||| || ||||| | |||||||| || |
Sbjct 1234057 GCAGGTCAAGGCGAAGATACTGGAGCGCATGGCCGAGTGGACCAACATGTTCGCTAGCGA 1234116
Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121
|| || || || |||||| |||||| || ||| ||| |||||||| ||| ||
Sbjct 1234117 TCCCGACCTGGGAATCATGTCTGGCGCCTATCAGAAGCTCAAGTCACAAAGTACGTTGGA 1234176
Query 122 TCAACTCTGGTTCGTTGGGAGCAC-TGACCAACGTGTTGTAGACCCTAACCTGCGACCTC 180
| | | | | | | ||| | | ||| || |||||| ||||| ||| | |
Sbjct 1234177 G-AGGTATCGGTACT---GCGCATGTTGCTAACAAGTCCCAGACCCCAACCTCCGAGCGC 1234232
Query 181 CGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGC 240
| || || || || ||||| |||||| | ||| |||||||| |||||||| |||||||
Sbjct 1234233 CCTCCAAGCCACAAAAGACGCAGATCTCCGACGTCGACCGCCAAAAGGAAGAAGAGGAGC 1234292
Query 241 TACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGC-----GGGACCGAGCCATCCGCCGC 295
|||| |||||||| || | || | | || || || ||| |||| | || ||
Sbjct 1234293 TACAAATGGCGCTTGCCATGTCGAT--ACGAGAGTCCAAAGGTGCCGCGCCAACGGCTGC 1234350
Query 296 CAGGTCCAA---CCAGCCGCAAGCAAAAGCCCCAC--AACAATCCGCCCCGGAACAAGAG 350
|| |||||| || | ||| | | | | | | | || |||| ||||| |
Sbjct 1234351 CAAGTCCAATACCCCTCAGCAGGGCGGATCTGCTCCTAGCGCTCAGCCC--GAACA---G 1234405
Query 351 CAGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTT 410
| |||| | | | || || || || || || |||||||| || || || |||||
Sbjct 1234406 CCTTCTCAACCCCTACCGTCAGGCACAACTGCGGCAACCGTCTCACGTGTGCGAGCCCTC 1234465
Query 411 TACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCG 470
| |||||| ||| ||||| ||||| || | || ||||| ||||| || ||||||
Sbjct 1234466 TTCGACTTTCAGCCATCGGAGCCCGGTGAACTACAGTTTCGCAAGGGCGATATCATTGCG 1234525
Query 471 GTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATC 530
|| ||||| || ||||||||||| ||||||||||| || || ||||| ||||| || |||
Sbjct 1234526 GTCCTCGAATCAGTGTACAAGGATTGGTGGAAGGGATCGCTACGTGGGCAGACGGGTATC 1234585
Query 531 TTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAA 590
||||| |||||||| || ||||| |||| ||||| || |||||||| ||||| |||
Sbjct 1234586 TTCCCGCTCAACTACGTGGAGAAATTGCAAGATCCGACACGCGAGGAGCTTGAGAGGGAA 1234645
Query 591 GCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTG 650
|| || | ||||| || |||||||| |||| | ||||||||||||| | || || ||
Sbjct 1234646 GCACAAAACGAGGCTGAGGTCTTTGCACAGATAAGGAACGTGGAGAAGTTACTGGCACTC 1234705
Query 651 CTGAGCACTAGTTC---------GAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCG 701
||||||||||| || ||| ||| || | ||||| ||||| ||||| |
Sbjct 1234706 CTGAGCACTAGCTCACAGCCAGGTGGTGGCGATGCGCGAGACAACGAGGAAATCACAGAG 1234765
Query 702 CTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCG 761
|| || ||| ||| | | || || ||||| |||| ||||| ||||| ||||| |||
Sbjct 1234766 CTCTATCACTCGACGCTAGCTATCCGACCGAAACTGATTGAGCTTATTGGAAAGTACTCG 1234825
Query 762 CAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTG-TG-TTGGCCACTGATCGTGT 819
|| ||||||||||||| || | | || | || || || | || |||| | |
Sbjct 1234826 CAGAAGAAGGGTAAGTCAAA---TATGAGCAGAGTTATGATGATCAGCGGCTGA--CTTT 1234880
Query 820 TCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAAC 879
|||||| || || ||| | |||||||||||||||||||| ||||| ||||||||| |
Sbjct 1234881 AGTAGATGACTTTACACAGTTGAACGAGAAGTTCATCAAGGCTCGCCGAGACTACGAAGC 1234940
Query 880 CCTCCTTGAAGCCTCGATGTCGCAACC 906
| | || ||||| || ||||| |||||
Sbjct 1234941 CATGCTGGAAGCATCCATGTCCCAACC 1234967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945572792820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |