Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq24 416 9e-113
>seq24
Length=593787
Score = 416 bits (460), Expect = 9e-113
Identities = 656/929 (71%), Gaps = 42/929 (5%)
Strand=Plus/Minus
Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61
|||| ||||||| ||||| || ||||| |||| || ||||| | |||||||| || |
Sbjct 419083 GCAGGTCAAGGCGAAGATACTGGAGCGCATGGCCGAGTGGACCAACATGTTCGCTAGCGA 419024
Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121
|| || || || |||||| |||||| || ||| ||| |||||||| ||| ||
Sbjct 419023 TCCCGACCTGGGAATCATGTCTGGCGCCTATCAGAAGCTCAAGTCACAAAGTACGTTGGA 418964
Query 122 TCAACTCTGGTTCGTTGGGAGCAC-TGACCAACGTGTTGTAGACCCTAACCTGCGACCTC 180
| | | | | | | ||| | | ||| || |||||| ||||| ||| | |
Sbjct 418963 G-AGGTATCGGTACT---GCGCATGTTGCTAACAAGTCCCAGACCCCAACCTCCGAGCGC 418908
Query 181 CGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGC 240
| || || || || ||||| |||||| | ||| |||||||| |||||||| |||||||
Sbjct 418907 CCTCCAAGCCACAAAAGACGCAGATCTCCGACGTCGACCGCCAAAAGGAAGAAGAGGAGC 418848
Query 241 TACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGC-----GGGACCGAGCCATCCGCCGC 295
|||| |||||||| || | || | | || || || ||| |||| | || ||
Sbjct 418847 TACAAATGGCGCTTGCCATGTCGAT--ACGAGAGTCCAAAGGTGCCGCGCCAACGGCTGC 418790
Query 296 CAGGTCCAA---CCAGCCGCAAGCAAAAGC--CCCACAACAATCCGCCCCGGAACAAGAG 350
|| |||||| || | ||| | | | | | || | || |||| ||||| |
Sbjct 418789 CAAGTCCAATACCCCTCAGCAGGGCGGATCTGCTCCCAGCGCTCAGCCC--GAACA---G 418735
Query 351 CAGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTT 410
| |||| | | | || || || || || || |||||||| ||||| || |||||
Sbjct 418734 CCCTCTCAACCCCTACCGTCAGGCACAACTGCGGCAACCGTCTCACGCGTGCGAGCCCTC 418675
Query 411 TACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCG 470
| |||||| ||| ||||| ||||| || | || ||||| |||||||| || |||
Sbjct 418674 TTCGACTTTCAGCCATCGGAGCCCGGTGAACTACAGTTTCGCAAGGGCGACATCATCGCG 418615
Query 471 GTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATC 530
|| ||||| || ||||||||||| ||||||||||| || || ||||| ||||| || |||
Sbjct 418614 GTCCTCGAATCAGTGTACAAGGATTGGTGGAAGGGATCGCTACGTGGGCAGACGGGTATC 418555
Query 531 TTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAA 590
||||| |||||||| || |||||||||||||| || || |||||||| |||||||||
Sbjct 418554 TTCCCACTCAACTACGTGGAGAAGCTGCAGGACCCGACACGCGAGGAGCTTGAGAGAGAA 418495
Query 591 GCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTG 650
|| |||| ||||| || || || || | || | ||||||||||||| | || || ||
Sbjct 418494 GCACAGAATGAGGCTGAGGTATTCGCACAAATAAGGAACGTGGAGAAGTTACTGGCACTC 418435
Query 651 CTGAGCACTAGTTC---------GAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCG 701
||||||||||| || ||| ||| || | ||||| |||||||| ||| |
Sbjct 418434 CTGAGCACTAGCTCACAGCCAGGTGGTGGCGATGCGCGAGACAACGAGGAGATTACTGAG 418375
Query 702 CTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCG 761
|| ||||| ||| | | || || |||||| |||| ||||| ||||| ||||| |||
Sbjct 418374 CTCTACCATTCGACGCTAGCTATCCGACCGAAGCTGATTGAGCTTATTGGAAAGTACTCG 418315
Query 762 CAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTG-TG-TTGGCCACTGATCGTGT 819
|| ||||||||||||| || | | || | || || || | || |||| |
Sbjct 418314 CAGAAGAAGGGTAAGTCCAA---TATGAGCAGAGTTATGATGATCAGCGGCTGA----CT 418262
Query 820 TC--CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAA 877
|| ||||||| || || ||| | |||||||||||||||||||| ||||| |||||||||
Sbjct 418261 TCAGCAGATGACTTTACACAGTTGAACGAGAAGTTCATCAAGGCTCGCCGAGACTACGAA 418202
Query 878 ACCCTCCTTGAAGCCTCGATGTCGCAACC 906
|| | || ||||| || ||||| |||||
Sbjct 418201 GCCATGCTGGAAGCATCCATGTCCCAACC 418173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945586222005
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |