Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq24 416 9e-113 >seq24 Length=593787 Score = 416 bits (460), Expect = 9e-113 Identities = 656/929 (71%), Gaps = 42/929 (5%) Strand=Plus/Minus Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61 |||| ||||||| ||||| || ||||| |||| || ||||| | |||||||| || | Sbjct 419083 GCAGGTCAAGGCGAAGATACTGGAGCGCATGGCCGAGTGGACCAACATGTTCGCTAGCGA 419024 Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121 || || || || |||||| |||||| || ||| ||| |||||||| ||| || Sbjct 419023 TCCCGACCTGGGAATCATGTCTGGCGCCTATCAGAAGCTCAAGTCACAAAGTACGTTGGA 418964 Query 122 TCAACTCTGGTTCGTTGGGAGCAC-TGACCAACGTGTTGTAGACCCTAACCTGCGACCTC 180 | | | | | | | ||| | | ||| || |||||| ||||| ||| | | Sbjct 418963 G-AGGTATCGGTACT---GCGCATGTTGCTAACAAGTCCCAGACCCCAACCTCCGAGCGC 418908 Query 181 CGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGC 240 | || || || || ||||| |||||| | ||| |||||||| |||||||| ||||||| Sbjct 418907 CCTCCAAGCCACAAAAGACGCAGATCTCCGACGTCGACCGCCAAAAGGAAGAAGAGGAGC 418848 Query 241 TACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGC-----GGGACCGAGCCATCCGCCGC 295 |||| |||||||| || | || | | || || || ||| |||| | || || Sbjct 418847 TACAAATGGCGCTTGCCATGTCGAT--ACGAGAGTCCAAAGGTGCCGCGCCAACGGCTGC 418790 Query 296 CAGGTCCAA---CCAGCCGCAAGCAAAAGC--CCCACAACAATCCGCCCCGGAACAAGAG 350 || |||||| || | ||| | | | | | || | || |||| ||||| | Sbjct 418789 CAAGTCCAATACCCCTCAGCAGGGCGGATCTGCTCCCAGCGCTCAGCCC--GAACA---G 418735 Query 351 CAGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTT 410 | |||| | | | || || || || || || |||||||| ||||| || ||||| Sbjct 418734 CCCTCTCAACCCCTACCGTCAGGCACAACTGCGGCAACCGTCTCACGCGTGCGAGCCCTC 418675 Query 411 TACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCG 470 | |||||| ||| ||||| ||||| || | || ||||| |||||||| || ||| Sbjct 418674 TTCGACTTTCAGCCATCGGAGCCCGGTGAACTACAGTTTCGCAAGGGCGACATCATCGCG 418615 Query 471 GTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATC 530 || ||||| || ||||||||||| ||||||||||| || || ||||| ||||| || ||| Sbjct 418614 GTCCTCGAATCAGTGTACAAGGATTGGTGGAAGGGATCGCTACGTGGGCAGACGGGTATC 418555 Query 531 TTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAA 590 ||||| |||||||| || |||||||||||||| || || |||||||| ||||||||| Sbjct 418554 TTCCCACTCAACTACGTGGAGAAGCTGCAGGACCCGACACGCGAGGAGCTTGAGAGAGAA 418495 Query 591 GCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTG 650 || |||| ||||| || || || || | || | ||||||||||||| | || || || Sbjct 418494 GCACAGAATGAGGCTGAGGTATTCGCACAAATAAGGAACGTGGAGAAGTTACTGGCACTC 418435 Query 651 CTGAGCACTAGTTC---------GAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCG 701 ||||||||||| || ||| ||| || | ||||| |||||||| ||| | Sbjct 418434 CTGAGCACTAGCTCACAGCCAGGTGGTGGCGATGCGCGAGACAACGAGGAGATTACTGAG 418375 Query 702 CTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCG 761 || ||||| ||| | | || || |||||| |||| ||||| ||||| ||||| ||| Sbjct 418374 CTCTACCATTCGACGCTAGCTATCCGACCGAAGCTGATTGAGCTTATTGGAAAGTACTCG 418315 Query 762 CAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTG-TG-TTGGCCACTGATCGTGT 819 || ||||||||||||| || | | || | || || || | || |||| | Sbjct 418314 CAGAAGAAGGGTAAGTCCAA---TATGAGCAGAGTTATGATGATCAGCGGCTGA----CT 418262 Query 820 TC--CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAA 877 || ||||||| || || ||| | |||||||||||||||||||| ||||| ||||||||| Sbjct 418261 TCAGCAGATGACTTTACACAGTTGAACGAGAAGTTCATCAAGGCTCGCCGAGACTACGAA 418202 Query 878 ACCCTCCTTGAAGCCTCGATGTCGCAACC 906 || | || ||||| || ||||| ||||| Sbjct 418201 GCCATGCTGGAAGCATCCATGTCCCAACC 418173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945586222005