Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq17 430 4e-117 >seq17 Length=296578 Score = 430 bits (476), Expect = 4e-117 Identities = 659/933 (71%), Gaps = 50/933 (5%) Strand=Plus/Minus Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61 |||| ||||||| ||||| || ||||| |||| || ||||| | |||||||| || | Sbjct 149358 GCAGGTCAAGGCGAAGATACTGGAGCGCATGGCCGAGTGGACCAACATGTTCGCTAGCGA 149299 Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121 || || || || |||||| |||||| || ||| ||| |||||||| ||| || Sbjct 149298 TCCCGACCTGGGAATCATGTCTGGCGCCTATCAGAAGCTCAAGTCACAAAGTACGTTGGA 149239 Query 122 T------CAACTCTG-GTTCGTTGGGAGCACTGACCAACGTGTTGTAGACCCTAACCTGC 174 || | ||| | |||| | ||| || |||||| ||||||| Sbjct 149238 GAGGTACCAGCACTGCGCATGTTG----------CTAACAAGTCTCAGACCCCAACCTGC 149189 Query 175 GACCTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGG 234 || | || || || || || ||||| |||||| | ||| |||||||| |||||||| | Sbjct 149188 GAGCGCCCTCCAAGCCACAAAAGACGCAGATCTCTGACGTCGACCGCCAAAAGGAAGAAG 149129 Query 235 AGGAGCTACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGC-----GGGACCGAGCCATC 289 |||||||||| |||||||| || | || | | || || || ||| ||| | Sbjct 149128 AGGAGCTACAAATGGCGCTTGCCATGTCGAT--ACGAGAGTCCAAAGGCGCCGCACCAAC 149071 Query 290 CGCCGCCAGGTCCAA---CCAGCCGCAAGCAAAAGC--CCCACAACAATCCGCCCCGGAA 344 || |||| |||||| || | ||| | | | | | || | || |||| ||| Sbjct 149070 GGCTGCCAAGTCCAATACCCCTCAGCAGGGCGGATCTGCTCCCAGCGCTCAGCCC--GAA 149013 Query 345 CAAGAGCAGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGC 404 || || |||| | | | || || || || || || |||||||| ||||| || Sbjct 149012 CA---GCCCTCTCAACCCCTACCGTCAGGCACAACTGCGGCAACCGTCTCACGCGTGCGA 148956 Query 405 GCCCTTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATT 464 ||||| | |||||| ||| ||||| ||||| || | |||||||| |||||||| Sbjct 148955 GCCCTCTTCGACTTTCAGCCATCGGAGCCCGGTGAACTACAGTTCCGCAAGGGCGACATC 148896 Query 465 ATTGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACC 524 || ||||| ||||| || ||||||||||| ||||||||||| || || ||||| ||||| Sbjct 148895 ATCGCGGTCCTCGAATCAGTGTACAAGGATTGGTGGAAGGGATCGCTACGTGGGCAGACA 148836 Query 525 GGCATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAG 584 || |||||||| || ||||| || |||||| |||| ||||| || |||||||| ||| Sbjct 148835 GGTATCTTCCCGCTAAACTACGTGGAGAAGTTGCAAGATCCGACACGCGAGGAGCTTGAG 148776 Query 585 AGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTA 644 |||||||| |||| ||||| || || || || | || | ||||||||||||| | || Sbjct 148775 AGAGAAGCACAGAATGAGGCTGAGGTATTCGCACAAATAAGGAACGTGGAGAAGTTACTG 148716 Query 645 GCTCTGCTGAGCACTAGTTC---------GAGTGCCGACGCTAGGGACAATGAGGAGATC 695 || || |||||||||||||| ||| ||| || | ||||| ||||||||| Sbjct 148715 GCACTCCTGAGCACTAGTTCACAGCCAGGTGGTGGCGATGCGCGAGACAACGAGGAGATC 148656 Query 696 ACTTCGCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAG 755 || ||| |||||| ||| | | || |||||||||||||| ||||||||||| ||| Sbjct 148655 ACAGAGCTATACCACTCGACGCTAGCCATCCGGCCGAAGTTGATTGAGCTCATTGGAAAG 148596 Query 756 TATTCGCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTG-TG-TTGGCCACTGA 813 || || |||||||||||||||| || | | || | || || || | || |||| Sbjct 148595 TACTCACAAAAGAAGGGTAAGTCCAA---TATGAGCAGAGTTATGATGATCAGCGGCTGA 148539 Query 814 TCGTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTA 873 | | ||||||| || || ||| | |||||||||||||||||||| ||||| ||||| Sbjct 148538 --CTTTAGCAGATGACTTTACACAGTTGAACGAGAAGTTCATCAAGGCTCGCCGAGACTA 148481 Query 874 CGAAACCCTCCTTGAAGCCTCGATGTCGCAACC 906 |||| || | || ||||| || ||||| ||||| Sbjct 148480 CGAAGCCATGCTGGAAGCATCCATGTCCCAACC 148448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945504600465