Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1154 230 7e-57 >seq1154 Length=255257 Score = 230 bits (254), Expect = 7e-57 Identities = 389/558 (70%), Gaps = 14/558 (3%) Strand=Plus/Minus Query 362 TATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCAC 421 |||| | ||||| || || || ||||| || || |||||||||||| | || |||||| Sbjct 171195 TATTCCCTCTGGCACGACTGCCGCTACAGTATCTCGCGTTCGCGCCTTGTATGACTTCCA 171136 Query 422 GCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTC 481 ||| || ||||| || || | || || |||||||| ||||| || || | ||||| Sbjct 171135 GCCTTCCGAACCTGGAGAACTTCAATTTCGAAAAGGCGATATTATAGCTGTCTTGGAGTC 171076 Query 482 TGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAA 541 ||| || ||||| |||||||| ||||| | || || ||| ||||| || || | || Sbjct 171075 TGTTTATAAGGATTGGTGGAAAGGTTCATTACGGGGTCAGGTTGGCATATTTCCATTGAA 171016 Query 542 CTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGA 601 ||||| || ||||| ||||| ||| |||||||||| || | || || || ||||| Sbjct 171015 TTATGTGGAAAAGCTTTCAGATCCAACCCAGGAGGAGCTACAGCGGGAGGCCCAAATGGA 170956 Query 602 GGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACTAG 661 || ||||| || || ||||| || |||||||| ||||| | || || |||| || || Sbjct 170955 AGCCGAAGTTTTCGCCGAGATAAAAAACGTGGAAAAGCTTTTGGCGCTCTTGAGTACCAG 170896 Query 662 TTCGAGTGCCG------ACGCTAGGGACAATGAGGAGATCACTTCGCTGTACCACAAGAC 715 || ||| | | | ||| ||||| || ||||| | | || ||| || Sbjct 170895 ---CAGCCCCGAATTGAATGTTCAGGAAAATGAAGAAATCACCAAGTTATATCACTCCAC 170839 Query 716 AGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAA 775 | || | || ||||||||| |||| ||||| |||||||| |||||| | ||||| ||||| Sbjct 170838 ATTGGCAATTCGGCCGAAGCTGATAGAGCTGATTGGCAAATATTCGAAGAAGAAAGGTAA 170779 Query 776 GTGGAATCTTTTACGCGAATTTGTGTGTTGGC-CACTGATCGTGTTCCAGATGATTTCAC 834 || || || | | || || | | || || || ||||||| || || Sbjct 170778 -TG--AT-TTCGATTGGTGGTTCCGTAATAACTTGCTAATTTGCTTGCAGATGACTTTAC 170723 Query 835 GCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTC 894 || ||||||||||| || |||||||| || | || || ||| | | |||||||| || Sbjct 170722 TCAACTCAACGAGAAATTTATCAAGGCTCGAAGAGATTATGAAGCGTTGCTTGAAGCATC 170663 Query 895 GATGTCGCAACCAGCGCA 912 ||| | || ||||| || Sbjct 170662 CATGACCCATCCAGCACA 170645 Score = 80.6 bits (88), Expect = 8e-12 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 7 TCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTG 66 ||||| | ||||| || |||| ||||| | |||||||||||||| |||| ||| | | Sbjct 171567 TCAAGTCTAAGATACTGGAGCATATGGAACAGTGGACGGAGATGTTTTCCAGCAACGCGG 171508 Query 67 ATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAA 103 || ||||||| |||||||| || || |||| ||| || Sbjct 171507 ATTTTGGCATTATGGAGCAAGCTTACATGACGCTGAA 171471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15944992896195