Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18] 1,014 sequences; 54,474,545 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq89 172 2e-39 seq3 161 3e-36 >seq89 Length=210758 Score = 172 bits (190), Expect = 2e-39 Identities = 212/290 (73%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 369 TCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCG 428 ||||| || || || || || || || || || | || || | || ||| || | Sbjct 11683 TCTGGTACAACTGCTGCAACAGTATCGCGTGTCAGGGCACTGTTTGATTTCCAAGCCACT 11624 Query 429 GAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTAC 488 || || | |||||| | ||| | || ||||| |||||||| || || |||||||| ||| Sbjct 11623 GATCCAGATGAGTTGACCTTCAGGAAGGGCGATATTATTGCAGTGCTTGAGTCTGTATAC 11564 Query 489 AAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTC 548 ||||| ||||||||||| | || | ||||| || ||||| ||||| || || || ||| Sbjct 11563 AAGGATTGGTGGAAGGGATTACTCAGGGGACAAACTGGCATTTTCCCTCTGAATTACGTC 11504 Query 549 GAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAA 608 ||||| ||| ||||| || ||| || || || ||||||| || ||||| || || Sbjct 11503 GAGAAACTGGCAGATCCCACGCCGGAAGAACTGCAGCGAGAAGCACAAATGGAAGCCGAG 11444 Query 609 GTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 |||||||| ||||| || || || |||||| |||| | ||||||||||| Sbjct 11443 GTCTTTGCAGAGATTAAAAATGTCGAGAAGTTGCTCACGCTGCTGAGCAC 11394 >seq3 Length=983725 Score = 161 bits (178), Expect = 3e-36 Identities = 371/551 (67%), Gaps = 32/551 (6%) Strand=Plus/Plus Query 163 ACCCTAACCTGCGACCTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCC 222 |||| || || | ||||| || ||| ||||| || | | || |||| || |||| Sbjct 231757 ACCCAAATCTACATCCTCCTTCAGCACCATCGAAGAGCCGGCTTACAGACTTAGATCGCC 231816 Query 223 AGAAGGAAGAGGAGGAGCTACAGATGGCGCTGGCACTCTCCGTCAAGGA--AAGCGGGAC 280 |||||||||| |||||| |||| ||||||||| | || || |||| || | || Sbjct 231817 AGAAGGAAGAAGAGGAGTTACAAATGGCGCTGAAGTTATCGATCCAGGATAAAACATCAC 231876 Query 281 CGAGCCATCCGCCGCCAGGTCCAACCAGCCGCAAGCAAAAGCCCCA-CAACAATCCGCCC 339 || || || | | || ||||||| ||| ||| || | || || | Sbjct 231877 AGACACAA-----GCAAAGACCTCCCAGCCG---GCA---GCCTCATCTGCA----GCGC 231921 Query 340 CGGAACAAGAGCAGCAT------CAAGCTA---TTGCATCTGGAACCACAGCAGCTACCG 390 | | ||||| ||||| | ||| | || | ||||| || || || || || | Sbjct 231922 CTGCACAAGCGCAGCCTGCTGCGCAAACATCAGTTCCTTCTGGTACAACTGCTGCAACAG 231981 Query 391 TCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCC 450 | || || || | || || | || ||| || | || || | |||||| | ||| Sbjct 231982 TATCGCGTGTCAGGGCACTGTTTGATTTCCAAGCCACTGATCCAGATGAGTTGACCTTCA 232041 Query 451 GCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTC 510 | || ||||| |||||||| || || ||||| || |||||||| ||||||||||| | | Sbjct 232042 GGAAGGGCGATATTATTGCAGTGCTTGAGTCAGTATACAAGGATTGGTGGAAGGGGTTAC 232101 Query 511 TGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCA 570 | | ||||| || ||||| ||||| || || || |||||||| ||| || || || Sbjct 232102 TCAGGGGACAAACTGGCATTTTCCCTCTGAATTACGTCGAGAAACTGGCAGACCCCACGC 232161 Query 571 AGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACG 630 || || || || ||||||| || ||||| || || |||||||| ||||| || || | Sbjct 232162 CAGAAGAACTGCAGCGAGAAGCACAAATGGAAGCCGAGGTCTTTGCAGAGATTAAAAATG 232221 Query 631 TGGAGAAGCTGCTAGCTCTGCTGAGCA---CTAGTTCGAGTGCCG-ACGCTAGGGACAAT 686 | |||||| |||| | |||||||||| ||| |||| | || | | | | | || ||| Sbjct 232222 TCGAGAAGTTGCTCACGCTGCTGAGCACATCTACTTCG-GAGCTGAATGTTCGAGATAAT 232280 Query 687 GAGGAGATCAC 697 || ||||| || Sbjct 232281 GAAGAGATTAC 232291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945423153330