Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amorphotheca_20resinae_20[genbank_20GCA_5F001270345.1_202015-08-18]
1,014 sequences; 54,474,545 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq89 172 2e-39
seq3 161 3e-36
>seq89
Length=210758
Score = 172 bits (190), Expect = 2e-39
Identities = 212/290 (73%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 369 TCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCG 428
||||| || || || || || || || || || | || || | || ||| || |
Sbjct 11683 TCTGGTACAACTGCTGCAACAGTATCGCGTGTCAGGGCACTGTTTGATTTCCAAGCCACT 11624
Query 429 GAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTAC 488
|| || | |||||| | ||| | || ||||| |||||||| || || |||||||| |||
Sbjct 11623 GATCCAGATGAGTTGACCTTCAGGAAGGGCGATATTATTGCAGTGCTTGAGTCTGTATAC 11564
Query 489 AAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTC 548
||||| ||||||||||| | || | ||||| || ||||| ||||| || || || |||
Sbjct 11563 AAGGATTGGTGGAAGGGATTACTCAGGGGACAAACTGGCATTTTCCCTCTGAATTACGTC 11504
Query 549 GAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAA 608
||||| ||| ||||| || ||| || || || ||||||| || ||||| || ||
Sbjct 11503 GAGAAACTGGCAGATCCCACGCCGGAAGAACTGCAGCGAGAAGCACAAATGGAAGCCGAG 11444
Query 609 GTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658
|||||||| ||||| || || || |||||| |||| | |||||||||||
Sbjct 11443 GTCTTTGCAGAGATTAAAAATGTCGAGAAGTTGCTCACGCTGCTGAGCAC 11394
>seq3
Length=983725
Score = 161 bits (178), Expect = 3e-36
Identities = 371/551 (67%), Gaps = 32/551 (6%)
Strand=Plus/Plus
Query 163 ACCCTAACCTGCGACCTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCC 222
|||| || || | ||||| || ||| ||||| || | | || |||| || ||||
Sbjct 231757 ACCCAAATCTACATCCTCCTTCAGCACCATCGAAGAGCCGGCTTACAGACTTAGATCGCC 231816
Query 223 AGAAGGAAGAGGAGGAGCTACAGATGGCGCTGGCACTCTCCGTCAAGGA--AAGCGGGAC 280
|||||||||| |||||| |||| ||||||||| | || || |||| || | ||
Sbjct 231817 AGAAGGAAGAAGAGGAGTTACAAATGGCGCTGAAGTTATCGATCCAGGATAAAACATCAC 231876
Query 281 CGAGCCATCCGCCGCCAGGTCCAACCAGCCGCAAGCAAAAGCCCCA-CAACAATCCGCCC 339
|| || || | | || ||||||| ||| ||| || | || || |
Sbjct 231877 AGACACAA-----GCAAAGACCTCCCAGCCG---GCA---GCCTCATCTGCA----GCGC 231921
Query 340 CGGAACAAGAGCAGCAT------CAAGCTA---TTGCATCTGGAACCACAGCAGCTACCG 390
| | ||||| ||||| | ||| | || | ||||| || || || || || |
Sbjct 231922 CTGCACAAGCGCAGCCTGCTGCGCAAACATCAGTTCCTTCTGGTACAACTGCTGCAACAG 231981
Query 391 TCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCC 450
| || || || | || || | || ||| || | || || | |||||| | |||
Sbjct 231982 TATCGCGTGTCAGGGCACTGTTTGATTTCCAAGCCACTGATCCAGATGAGTTGACCTTCA 232041
Query 451 GCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTC 510
| || ||||| |||||||| || || ||||| || |||||||| ||||||||||| | |
Sbjct 232042 GGAAGGGCGATATTATTGCAGTGCTTGAGTCAGTATACAAGGATTGGTGGAAGGGGTTAC 232101
Query 511 TGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCA 570
| | ||||| || ||||| ||||| || || || |||||||| ||| || || ||
Sbjct 232102 TCAGGGGACAAACTGGCATTTTCCCTCTGAATTACGTCGAGAAACTGGCAGACCCCACGC 232161
Query 571 AGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACG 630
|| || || || ||||||| || ||||| || || |||||||| ||||| || || |
Sbjct 232162 CAGAAGAACTGCAGCGAGAAGCACAAATGGAAGCCGAGGTCTTTGCAGAGATTAAAAATG 232221
Query 631 TGGAGAAGCTGCTAGCTCTGCTGAGCA---CTAGTTCGAGTGCCG-ACGCTAGGGACAAT 686
| |||||| |||| | |||||||||| ||| |||| | || | | | | | || |||
Sbjct 232222 TCGAGAAGTTGCTCACGCTGCTGAGCACATCTACTTCG-GAGCTGAATGTTCGAGATAAT 232280
Query 687 GAGGAGATCAC 697
|| ||||| ||
Sbjct 232281 GAAGAGATTAC 232291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945423153330
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |