Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aspergillus_20niger_20[genbank_20GCA_5F001931795.1_202017-01-04] 223 sequences; 36,079,011 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq50 387 4e-104 >seq50 Length=543773 Score = 387 bits (428), Expect = 4e-104 Identities = 656/929 (71%), Gaps = 41/929 (4%) Strand=Plus/Minus Query 3 CAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAAC 62 ||| ||||| | |||||||| || || ||| ||||||||||||||||||||||||||| Sbjct 532405 CAGGTCAAGTCGAAGATCCTAGAACGCATGCAAGAATGGACGGAGATGTTCGCCAGTAAC 532346 Query 63 CCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGT--GTG 120 || ||| | || |||||||| || || || |||| ||| ||||| || ||| | || Sbjct 532345 CCAGATTTCGGAATCATGGAACAAGCATACATGAAGCTGAAGACTCAGAGTAAGATCGTT 532286 Query 121 ATCAACTCTGGTTCGTTGG-GAGCACTGACCAACGTGTTGTAGACCCTAACCTGCGACCT 179 | || || || | ||||| ||| | || || | | ||||||| ||||||| || Sbjct 532285 AGCAGCTATGAAT-GTTGGAGAGAA---ACTCAC-TATCTTAGACCCGAACCTGCAGCCA 532231 Query 180 CCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAG 239 ||||| || || |||| | || || || | || ||||| ||||||||||||||| Sbjct 532230 CCGTCCAAGCCCGGGAAGCGGGAAATTACCGATGCAGATCGCCAAAAGGAAGAGGAGGAG 532171 Query 240 CTACAGATGGCGCTGGCACTCTCCGTCA-AGGAAAG--CGGGACCGAGCCATCCGCCGCC 296 || || ||||| || |||||||| | | || |||| | || || || | |||| | Sbjct 532170 CTGCAAATGGCCCTCGCACTCTCGATAAGAGAAAAGGCCACGATCGCCCC-TGCGCCACA 532112 Query 297 AGGTCCAACCAGCCGCAAGCAAAAGCCCCA--CAACAATCCGCCCCGGAACAAGA-GCAG 353 | | | ||||| || || || ||| |||| | | || || || | || Sbjct 532111 GGCTGAAGCCAGCTCCA-GCGCT-GCTCCAGTCAACCAAAC--CCAGGCACCTGCTGCCA 532056 Query 354 CATC--AAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTT 411 | || |||| | | || || || | || || || || || ||||| | ||||| | Sbjct 532055 CCTCCCAAGCAGTCCCGTCGGGTACTTCTGCCGCCACAGTGTCGCGCGTGAGAGCCCTGT 531996 Query 412 ACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGG 471 |||||| ||| || |||||||| || ||| |||||||| || || | || || | Sbjct 531995 TCGACTTTCAGCCTTCAGAACCCGGTGAATTGCAGTTCCGCAAGGGAGATGTCATCGCTG 531936 Query 472 TTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCT 531 | |||||||| || |||||||| |||||||||||||| || | || ||||||||||||| Sbjct 531935 TCCTCGAGTCCGTCTACAAGGATTGGTGGAAGGGTTCCTTGAGAGGCCAGACCGGCATCT 531876 Query 532 TCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAG 591 ||||||| ||||| || ||||| || | || || || ||||||| | || | |||| Sbjct 531875 TCCCCCTTAACTACGTTGAGAAACTTCCTGACCCGACGGTGGAGGAGTTGCAGCGGGAAG 531816 Query 592 CTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGC 651 | |||||||| || || || || | |||| ||||| ||||| |||||| | |||| | Sbjct 531815 CCCAGATGGAAGCCGATGTTTTCGGTCAGATTAAGAATGTGGAAAAGCTGTTGACTCTTC 531756 Query 652 TGAGCACTAGTTCGAGTGCCGACGCT-------AGGGACAATGAGGAGATCACTTCGCTG 704 |||||||| | ||| |||| ||| ||||||||| || ||||| | ||| Sbjct 531755 TGAGCACTCG---GAGCTCCGA-GCTGAATGTGCAGGACAATGAAGAAATCACGGCCCTG 531700 Query 705 TACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAA 764 || ||| ||| || | || || || |||||||| ||||||||||| || || ||||| Sbjct 531699 TATCACTCTACATTGGCCATTCGCCCCAAGTTGATTGAGCTCATTGGGAAATACTCGCAG 531640 Query 765 AAGAAGGGTAAGTGGAATCTTTTACGCGA-ATTTGTGTGTTGGCCACTGATCGTGTTCCA 823 || ||||||||| || ||| ||| || | | || || || || | || || Sbjct 531639 AAAAAGGGTAAGATGA---TTT----CGACATGTCGCTATTCTCCGCTAAT-GCTTTGCA 531588 Query 824 GATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTC 883 || || |||||||||||||||||||||||||||||||| || | || ||||| | || Sbjct 531587 GACGAGTTCACGCAGCTCAACGAGAAGTTCATCAAGGCGCGGAGAGATTACGAGTCTCTG 531528 Query 884 CTTGAAGCCTCGATGTCGCAACCAGCGCA 912 || || || || ||| |||| ||||| || Sbjct 531527 CTGGAGGCGTCCATGGCGCACCCAGCACA 531499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945561107685