Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Beverwykella_20pulmonaria_20[genbank_20GCA_5F001599595.1_202016-03- 01] 50 sequences; 45,966,240 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq3 372 1e-99 >seq3 Length=4703234 Score = 372 bits (412), Expect = 1e-99 Identities = 648/933 (69%), Gaps = 52/933 (6%) Strand=Plus/Plus Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61 |||| |||| || ||||| | ||||| |||| || ||| | || ||||| || || | Sbjct 503508 GCAGGTCAAAGCCAAGATATTGGAGCGCATGGCAGAGTGGTCAGAAATGTTTGCAAGCGA 503567 Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121 ||| ||||| ||||| ||| || || ||| || ||| ||| | || ||| || | Sbjct 503568 CCCGGATCTGGGCATAATGCAGGGTGCTTATCAGAAGCTGAAGGCGCAGAGTATGTTTAC 503627 Query 122 TCAACTCTGGTTCGTTGGGAGCAC-TGACCAACG-----TGTTGT---AGACCCTAACCT 172 || | || | | |||| || | | || | || || ||| || || || Sbjct 503628 ACAGC---GG--CAT--GGAGGACATAAGCAGAGGCTGATGCAGTCACAGATCCCAATCT 503680 Query 173 GCGACCTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGA 232 ||| |||| ||||| || |||||| ||||||| || ||| || ||||||||||| || Sbjct 503681 TCGAGCTCCTTCGAAGCCACAGAAGTCCCAGATGACTGACGTCGATCGCCAGAAGGAGGA 503740 Query 233 GGAGGAGCTACAGATGGCGCTGGCACTCTCCGTCAAGGA-----AAGCGGGACCGAGCCA 287 ||| || || || |||||||||||| | ||| | ||||| ||| | | || || Sbjct 503741 GGAAGAACTTCAAATGGCGCTGGCAATGTCCATAAAGGAGTCGAAAGGTGCAACG--CCG 503798 Query 288 TCCGCCGCCAGGTCCAACCAGCCGCAA---GCAAAAGCCCCACAACAATCCGCCCCGGAA 344 ||||||| | ||||| || || || | || |||| | || | Sbjct 503799 ACCGCCGCGAAAGCCAACACACCTCAGAATGCGACTTCCGTTTCACAACCTGC------A 503852 Query 345 CAAGAGCAGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGC 404 |||| | ||| || | | | || || || || ||||| || ||||| || || || Sbjct 503853 CAAG--CCGCA-CAGTCCGTGTCCTCAGGTACAACGGCAGCAACAGTCTCTCGAGTACGG 503909 Query 405 GCCCTTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATT 464 || |||| ||||||| ||||||||||| ||||| || ||||| ||||||||||| Sbjct 503910 GCACTTTTCGACTTCCAACCCTCGGAACCGGGCGAACTGCAGTTCCGGAAAGGCGACATC 503969 Query 465 ATTGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACC 524 ||||| ||||| |||||||| ||||| || ||||||||||| || ||||| || || || Sbjct 503970 ATTGCAGTTCTAGAGTCTGTATACAAAGATTGGTGGAAGGGATCGCTGCGCGGGCAAACG 504029 Query 525 GGCATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAG 584 ||||||||||| | ||||| || ||||||||||||||||| || ||| ||||| ||| Sbjct 504030 GGCATCTTCCCTTTGAACTACGTTGAGAAGCTGCAGGATCCCACACGGGAAGAGCTGGAG 504089 Query 585 AGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTA 644 || || || || ||||| | ||| || || || ||||| ||||||||||| ||||| Sbjct 504090 AGGGAGGCGCAAATGGAAGGGGAGGTGTTCGCACAGATCCGAAACGTGGAGAAACTGCTT 504149 Query 645 GCTCTGCTGAGCACTAGTTCG---------AGTGCCGACGCTAGGGACAATGAGGAGATC 695 || || |||||||| || ||| || ||| | |||| |||||||||||| Sbjct 504150 GCGCTACTGAGCACGAGCTCGCAGGCGGGAGGTAGCGATGTGCGGGATAATGAGGAGATC 504209 Query 696 ACTTCGCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAG 755 || ||| || || ||| || | || ||||||||| ||||||| || ||||| ||| Sbjct 504210 ACCGAGCTCTATCATTCGACTCTGGCCATTCGGCCGAAGCTGATCGAACTTATTGGGAAG 504269 Query 756 TATTCGCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCACTG--A 813 || ||||| ||||||||||||| ||| | ||| | | | | | || | Sbjct 504270 TACTCGCAGAAGAAGGGTAAGT---TTCTCGTCAAAGAAACTAGGCTT---CAAGTGCTA 504323 Query 814 TCGTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTA 873 | | | |||||| ||||| || || || |||||||||||||| || ||||| ||||| Sbjct 504324 ACAAATACAAGATGACTTCACTCAACTGAATGAGAAGTTCATCAAAGCTCGCCGAGACTA 504383 Query 874 CGAAACCCTCCTTGAAGCCTCGATGTCGCAACC 906 |||| | ||||| ||||| || ||| | ||||| Sbjct 504384 CGAATCTCTCCTCGAAGCATCCATGACTCAACC 504416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945591279750