Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bipolaris_20oryzae_20[genbank_20GCA_5F001675385.1_202016-06-22] 1,640 sequences; 31,674,030 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1345 324 4e-85 >seq1345 Length=74887 Score = 324 bits (358), Expect = 4e-85 Identities = 643/938 (69%), Gaps = 33/938 (4%) Strand=Plus/Minus Query 7 TCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTG 66 ||||||| |||||||| ||||| |||| |||||||| || ||||| | || |||| | Sbjct 2829 TCAAGGCCAAGATCCTGGAGCGCATGGCAGAATGGACCGAAATGTTTTCTCGTGACCCAG 2770 Query 67 ATCTTGGCATCATGG--AGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGATCA 124 |||| ||||||||| ||| || ||||||||||| ||| |||| ||| || | || Sbjct 2769 ATCTCGGCATCATGTCAAGC--GCATATATGAGGCTAAAGTCACAGAGTATGTTGGCTCC 2712 Query 125 ACTCTGGTTCGTTGGGAGCACTGACCAACGTGTTGTAGACCCTAACCTGCGACCTCCGTC 184 | ||| ||| | || | || | ||||||| ||||| || | || || Sbjct 2711 ATAGCAGTTGAATGGTT-CGGTG-CTTACATAAAATAGACCCCAACCTCCGCGCACCCTC 2654 Query 185 GAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGCTACA 244 ||| || || ||||| ||||| |||| | || ||||||||||| |||||||| ||||| Sbjct 2653 GAAGCCACAAAAGACACAGATTTCGGATGCCGAGCGCCAGAAGGAGGAGGAGGAACTACA 2594 Query 245 GATGGCGCTGGCACTCTCCGTCAAGGAAAGC---GGGACCGAGCCATCCGCCGCCAGGTC 301 ||||| || || | || | | || | || | | ||| | |||||||| || Sbjct 2593 AATGGCTCTTGCTATGTCGATAAGAGAGTCCAAAGGCGCGGCTCCAACGGCCGCCAGTTC 2534 Query 302 CAACCAGCCGCAAGCAAAA--GCCCCACAACAATCCGCCCCGGAACAAGAGCAGCA--TC 357 |||| | || || ||||| | || | | | | |||| ||| ||| || | | Sbjct 2533 CAACAATCCTCA-GCAAAGCGGATCCGGATCTAGC-GCCC---AACGAGAACAACCAGTG 2479 Query 358 AAGCTATTGCATCT-GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGAC 416 ||| ||| || || || || || || || || || || || || || || | ||| Sbjct 2478 CAGCCTGTGCCTCAAGGCACAACCGCCGCAACTGTGTCGCGAGTACGGGCGCTCTTCGAT 2419 Query 417 TTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTC 476 ||| ||| || || || || || | ||||| || |||||||| || || || ||| Sbjct 2418 TTCCAGCCGTCAGAGCCTGGTGAACTACAATTCCGTAAGGGCGACATCATCGCTGTGCTC 2359 Query 477 GAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCC 536 || || || ||||||||||||||||| || || || ||||||||||| || || ||||| Sbjct 2358 GAATCGGTATACAAGGACTGGTGGAAAGGATCGCTACGTGGACAGACTGGTATTTTCCCG 2299 Query 537 CTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAG 596 |||||||| || |||||| |||| || || || ||||| || || | || || ||| Sbjct 2298 CTCAACTACGTGGAGAAGTTGCAAGACCCGACGCGCGAGGAACTTGAACGGGAGGCGCAG 2239 Query 597 ATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGC 656 | ||||| || || |||||| | || | ||| || || ||| |||| ||| || ||||| Sbjct 2238 AACGAGGCCGAGGTGTTTGCGCAAATAAGGAATGTAGAAAAGTTGCTTGCTTTGTTGAGC 2179 Query 657 ACTAGTTC---------GAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTAC 707 || || || ||| || || |||| || |||||||| || || || Sbjct 2178 ACCAGCTCTCAACCCGGTGGTGGTGATGCGCGGGATAACGAGGAGATTACAGAACTCTAT 2119 Query 708 CACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAG 767 ||| ||| || | || ||||| |||||||| |||||||||||||||||||| || ||| Sbjct 2118 CACTCGACCCTGGCTATCCGGCCAAAGTTGATTGAGCTCATTGGCAAGTATTCCCAGAAG 2059 Query 768 AAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCACTGATCGTGTTCCAGATG 827 || |||| || | | || | || | | | | ||| | | ||| |||||| Sbjct 2058 AAAGGTATGT-TCACCAGAGACCC--ATAGGCGATTCAGAAACTAACCATGT--CAGATG 2004 Query 828 ATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTG 887 | || || || | ||||| |||||||||||||| || || ||||| ||| | | || | Sbjct 2003 ACTTTACACAATTGAACGAAAAGTTCATCAAGGCTCGTCGAGACTATGAATCAATGCTCG 1944 Query 888 AAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTACGGT 925 | || || |||||||| || ||| ||| |||||| Sbjct 1943 AGGCATCCATGTCGCAGCCGCAGCAACCCCCTTACGGT 1906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945313975800