Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryosphaeria_20dothidea_20[genbank_20GCA_5F001717445.1_202016-08- 31] 1,134 sequences; 47,389,336 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq25 1018 0.0 >seq25 Length=459457 Score = 1018 bits (1128), Expect = 0.0 Identities = 1002/1292 (78%), Gaps = 50/1292 (4%) Strand=Plus/Minus Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61 |||| ||||||| ||||| || ||||| ||||| || ||| | ||||||||| ||| | Sbjct 273674 GCAGGTCAAGGCTAAGATTCTGGAGCGCATGGGCGAGTGGTCCGAGATGTTCTCCAAGGA 273615 Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121 ||| ||||| ||||| ||||||||||| || |||||||| ||||| || ||| |||| | Sbjct 273614 CCCGGATCTAGGCATAATGGAGCAGGCTTACATGAGGCTAAAGACGCAGAGTACGTGGCA 273555 Query 122 TCAACTCTGGTTCGTTGGGAGCACTGACCAACGTGTTGT------AGACCCTAACCTGCG 175 || || ||| | | || | |||| || | || | | |||||| ||||| || Sbjct 273554 TCGACCCTGATCTGCTGCGT-CACTTACTGATTTGGTATTCCCGCAGACCCCAACCTCCG 273496 Query 176 ACCTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGA 235 ||||| |||||||| || ||||| ||||||||||| || |||||||| |||||||| || Sbjct 273495 TCCTCCATCGAAACCGCAAAAGACTCAGATCACGGATTCAGACCGCCAAAAGGAAGAAGA 273436 Query 236 GGAGCTACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATCCGCCGC 295 |||||| || ||||| ||||| | || ||||||| | || ||| ||||| ||||| Sbjct 273435 GGAGCTTCAAATGGCCCTGGCCTTGTCAATCAAGGAGAACGCTACCTCACCATCGGCCGC 273376 Query 296 CAGGTCCAACCAGCCGCAAGCAAAAGCCCCACAA--CAATCCGCCCCGGAACAAGAGCAG 353 || ||||||||| || ||||||| | | ||| || | ||| | | |||||||| Sbjct 273375 CAAGTCCAACCAACCCCAAGCAAGCTCGACTCAAGCCACTACGCAGCAG--CAAGAGCAA 273318 Query 354 CATCAA---GCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTT 410 || || || ||||| || ||||| ||||| |||||||| |||||||| || || || Sbjct 273317 CAACACCAGGCCATTGCTTCCGGAACGACAGCCGCTACCGTATCCCGCGTCCGTGCTCTC 273258 Query 411 TACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCG 470 ||||||||||||||||| || |||||||| |||||||||||||| || || || || || Sbjct 273257 TACGACTTCACGCCCTCCGAGCCCGGCGAATTGGCTTTCCGCAAGGGTGATATCATCGCA 273198 Query 471 GTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATC 530 ||||||||||| || |||||||| ||||||||||| ||| ||||||||||||| ||||| Sbjct 273197 GTTCTCGAGTCAGTTTACAAGGATTGGTGGAAGGGCTCTTTGCGTGGACAGACGGGCATT 273138 Query 531 TTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAA 590 ||||| ||||||||||| |||||| |||||||||| || ||||||||||| |||||||| Sbjct 273137 TTCCCTCTCAACTATGTTGAGAAGTTGCAGGATCCGACGAAGGAGGAGCTGGAGAGAGAG 273078 Query 591 GCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTG 650 || || |||||||| || || || ||||| |||||||||||||||||| |||| |||||| Sbjct 273077 GCACAAATGGAGGCCGAGGTATTCGCGGAAATCAAGAACGTGGAGAAGTTGCTGGCTCTG 273018 Query 651 CTGAGCACTAGTTCGAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTACCAC 710 |||||||| | ||||| || || || || || |||||||||||||||||| |||| ||| Sbjct 273017 CTGAGCACCAACTCGAGCGCGGATGCGAGAGATAATGAGGAGATCACTTCGTTGTATCAC 272958 Query 711 AAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAG 770 ||||| || |||||||||| |||||||||||||||||||| ||||| ||||| |||||| Sbjct 272957 AAGACGGTTGCGATACGGCCAAAGTTGATCGAGCTCATTGGGAAGTACTCGCAGAAGAAG 272898 Query 771 GGTAA-----GTGGAATCTTTTACGCGAATTTGTGTGTTGGCCAC-----TGATCGTGTT 820 ||| | || | || || ||| ||| | |||| | | ||| Sbjct 272897 GGTGAGTCTGGTTGTATTGTTCACG-GAACT----------CCACAAAGTTAACCGTTCC 272849 Query 821 CCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACC 880 |||||||||||||| ||| | |||||||||||||||||||| || ||||| ||||| | Sbjct 272848 CCAGATGATTTCACACAGTTGAACGAGAAGTTCATCAAGGCTCGTCGCGATTACGAGGCT 272789 Query 881 CTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTACGGTCGTCAACCCTATGGC 940 ||||| ||||| |||||||||||| | |||||||| || || |||||||| || |||||| Sbjct 272788 CTCCTCGAAGCTTCGATGTCGCAAGCCGCGCAGCCTGGTTATGGTCGTCAGCCTTATGGC 272729 Query 941 TACGGCGCCGGCGCCCCGCCGCCTCAGAGTGCTCCGTACGGTGGCTATCCTCCTCAAGGA 1000 ||||| || || ||||| || || || |||||||| ||||| ||||||||||| |||||| Sbjct 272728 TACGGTGCGGGTGCCCCTCCACCACAAAGTGCTCCATACGGCGGCTATCCTCCGCAAGGA 272669 Query 1001 CCTCCTCAG------------GAACAGTTTTACTCGCCTACTCCAGCCGCAGACCAAGGC 1048 ||||| ||| || | || |||||| ||| ||| || |||||||||||| Sbjct 272668 CCTCCGCAGGGACCTCCGCAAGACCGGTATTACTCACCTGGTCCGGCAGCAGACCAAGGC 272609 Query 1049 TACGGATATCCTCCTCAGAATGGGCCTCAGCCCTTCACGATGGCTCAGCCCTCACAAGCA 1108 || || || || |||||||| || ||||||||||| | ||||| | || |||||| Sbjct 272608 TATGGCTACCCACCTCAGAACGGACCTCAGCCCTTTATGATGGTTACTCCTGGACAAGCT 272549 Query 1109 CCTCCTTCTGCACAGGTGGCTAGTCCTAGACCAGCGAATGGCGAGC---TCTCCTACGTC 1165 || || ||||||||||| | || || | || | || ||||| | | ||||||| Sbjct 272548 CCCCCGCCTGCACAGGTGACGAGCCCGAAGCCCGTTAACGGCGATCCCGCCGCCTACGTA 272489 Query 1166 CCGCAGCGCGTGCCTGTCGGTGGAAGGCCCACATCCATGGCCTTTCCCCAGGAAATGGCG 1225 || |||||||| || || |||||||| ||| || ||||| ||||| |||||||||||| Sbjct 272488 CCACAGCGCGTCCCCGTTGGTGGAAGACCCCAGTCGATGGCTTTTCCGCAGGAAATGGCG 272429 Query 1226 GCCAACAGCCCAGTGGACTCCAGGCCGCCTCC 1257 ||||||||||| |||||| |||| || ||||| Sbjct 272428 GCCAACAGCCCTGTGGACACCAGACCCCCTCC 272397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945402224730