Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04-
21] 3,371 sequences; 50,693,610 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq1140 223 1e-54
>seq1140
Length=57257
Score = 223 bits (246), Expect = 1e-54
Identities = 383/545 (70%), Gaps = 17/545 (3%)
Strand=Plus/Minus
Query 163 ACCCTAACCTGCGACCTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCC 222
|||| ||||| | ||||| || || ||||| || |||| || | ||||| |
Sbjct 40711 ACCCCAACCTACACCCTCCCTCCGCGCCATCGAAGAGCCGCCTCACAGATTTAGACCGAC 40652
Query 223 AGAAGGAAGAGGAGGAGCTACAGATGGCGCTGGCACTCTCCGT-CAAGGAAAGCGGGACC 281
|||||||||| |||||||| |||||||| ||| | ||| | |||| ||| | |
Sbjct 40651 AGAAGGAAGAAGAGGAGCTGCAGATGGCCCTGAAGTTATCCATTCAAGACAAGACAGCAC 40592
Query 282 GAGCCATCCGCCGCCAGGTCCAACCAGCCGCA--AGCAAAAGCCCCACAACAATCCGCCC 339
|||| || ||| | || |||||||||| | || | | |||| || |
Sbjct 40591 AAGCC--CCCAAGCCTGCTC-AACCAGCCGCCTCATCATCTGGTGTTCCACAA---GCTC 40538
Query 340 CGGAACAAGAGCAGCATCAAG--CTATTGCAT-CTGGAACCACAGCAGCTACCGTCTCCC 396
|| | |||| ||| | | | ||| | | ||||| ||||| || || |||||||
Sbjct 40537 AGGCGGCCGCTCAGCCTCAGGTCCCAGTGCCTACCGGAACTACAGCCGCAACGGTCTCCC 40478
Query 397 GCGTTCGCGCCCTTTACGACTTCACGCCCT-CGGAACCCGGCGAGTTGGCTTTCCGCAAA 455
||||| | || || | ||||||| | | || | || || | ||||||| | ||||| ||
Sbjct 40477 GCGTTAGAGCTCTGTTCGACTTC-CACGCTACCGATCCAGACGAGTTGACATTCCGAAAG 40419
Query 456 GGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGT 515
||||| |||||||| || | |||||||| |||||||| |||||||| || | || |
Sbjct 40418 GGCGATATTATTGCAGTATTGGAGTCTGTCTACAAGGATTGGTGGAAAGGCTTACTCAGA 40359
Query 516 GGACAGACCGGCATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAG 575
|| || |||||||| ||||| | ||||| ||||| ||| || ||||||||| ||
Sbjct 40358 GGCCAAACCGGCATTTTCCCTTTGAACTACGTCGAAAAGTTGGCGGATCCTACACCTGAA 40299
Query 576 GAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAG 635
|| | | | ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 40298 GAATTGCAACGGGAAGCACAGATGGAGGCGGAAGTCTTTGCTGAGATCAAGAACGTGGAG 40239
Query 636 AAGCTGCTAGCTCTGCTGAGCACTAGTTCGAGTGCC---GACGCTAGGGACAATGAGGAG 692
||||| || || | |||||||| || || | ||| | | ||||||||||||
Sbjct 40238 AAGCTCCTTACTTTACTGAGCACGTCGACGTCTGACCTGAACGTTCGAGACAATGAGGAG 40179
Query 693 ATCAC 697
|| ||
Sbjct 40178 ATTAC 40174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945012080745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |