Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cairneyella_20variabilis_20[genbank_20GCA_5F001625345.1_202016-04- 21] 3,371 sequences; 50,693,610 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1140 223 1e-54 >seq1140 Length=57257 Score = 223 bits (246), Expect = 1e-54 Identities = 383/545 (70%), Gaps = 17/545 (3%) Strand=Plus/Minus Query 163 ACCCTAACCTGCGACCTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCC 222 |||| ||||| | ||||| || || ||||| || |||| || | ||||| | Sbjct 40711 ACCCCAACCTACACCCTCCCTCCGCGCCATCGAAGAGCCGCCTCACAGATTTAGACCGAC 40652 Query 223 AGAAGGAAGAGGAGGAGCTACAGATGGCGCTGGCACTCTCCGT-CAAGGAAAGCGGGACC 281 |||||||||| |||||||| |||||||| ||| | ||| | |||| ||| | | Sbjct 40651 AGAAGGAAGAAGAGGAGCTGCAGATGGCCCTGAAGTTATCCATTCAAGACAAGACAGCAC 40592 Query 282 GAGCCATCCGCCGCCAGGTCCAACCAGCCGCA--AGCAAAAGCCCCACAACAATCCGCCC 339 |||| || ||| | || |||||||||| | || | | |||| || | Sbjct 40591 AAGCC--CCCAAGCCTGCTC-AACCAGCCGCCTCATCATCTGGTGTTCCACAA---GCTC 40538 Query 340 CGGAACAAGAGCAGCATCAAG--CTATTGCAT-CTGGAACCACAGCAGCTACCGTCTCCC 396 || | |||| ||| | | | ||| | | ||||| ||||| || || ||||||| Sbjct 40537 AGGCGGCCGCTCAGCCTCAGGTCCCAGTGCCTACCGGAACTACAGCCGCAACGGTCTCCC 40478 Query 397 GCGTTCGCGCCCTTTACGACTTCACGCCCT-CGGAACCCGGCGAGTTGGCTTTCCGCAAA 455 ||||| | || || | ||||||| | | || | || || | ||||||| | ||||| || Sbjct 40477 GCGTTAGAGCTCTGTTCGACTTC-CACGCTACCGATCCAGACGAGTTGACATTCCGAAAG 40419 Query 456 GGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGT 515 ||||| |||||||| || | |||||||| |||||||| |||||||| || | || | Sbjct 40418 GGCGATATTATTGCAGTATTGGAGTCTGTCTACAAGGATTGGTGGAAAGGCTTACTCAGA 40359 Query 516 GGACAGACCGGCATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAG 575 || || |||||||| ||||| | ||||| ||||| ||| || ||||||||| || Sbjct 40358 GGCCAAACCGGCATTTTCCCTTTGAACTACGTCGAAAAGTTGGCGGATCCTACACCTGAA 40299 Query 576 GAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAG 635 || | | | ||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 40298 GAATTGCAACGGGAAGCACAGATGGAGGCGGAAGTCTTTGCTGAGATCAAGAACGTGGAG 40239 Query 636 AAGCTGCTAGCTCTGCTGAGCACTAGTTCGAGTGCC---GACGCTAGGGACAATGAGGAG 692 ||||| || || | |||||||| || || | ||| | | |||||||||||| Sbjct 40238 AAGCTCCTTACTTTACTGAGCACGTCGACGTCTGACCTGAACGTTCGAGACAATGAGGAG 40179 Query 693 ATCAC 697 || || Sbjct 40178 ATTAC 40174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945012080745