Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq6 170 6e-39 >seq6 Length=220700 Score = 170 bits (188), Expect = 6e-39 Identities = 214/291 (74%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 369 TCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCG 428 || || || || || || || || ||||||||||| || |||| ||| ||| | | Sbjct 105834 TCCGGGACAACTGCTGCAACGGTATCCCGCGTTCGGGCGCTTTTCGATTTCCAGGCTAGC 105775 Query 429 GAACCCGGCGAGTTG-GCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTA 487 ||||||| |||||| |||||| | || || || || |||||||||||||| ||||| | Sbjct 105774 GAACCCGAAGAGTTGAGCTTTC-GAAAGGGAGATATCATTGCGGTTCTCGAATCTGTATT 105716 Query 488 CAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGT 547 |||||| ||||||||||||| || | || || ||||| || || || || || ||||| Sbjct 105715 CAAGGATTGGTGGAAGGGTTTCTTGAGGGGCCAAACCGGAATTTTTCCTCTAAATTATGT 105656 Query 548 CGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGA 607 ||||| ||| || ||||| || || | ||||||| ||||||||||| || Sbjct 105655 GGAGAAACTGGCAGACCCTACACCAGAAGAATTACAGAGAGAGGCTCAGATGGAACAAGA 105596 Query 608 AGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 |||||||| ||||| || || || |||||||| || || || | ||||| Sbjct 105595 GGTCTTTGCAGAGATAAAAAATGTCGAGAAGCTTCTTACTTTGTTAAGCAC 105545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945507739755