Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_021223.1 Length=1762 Score E Sequences producing significant alignments: (Bits) Value seq587 91.5 2e-15 >seq587 Length=22415 Score = 91.5 bits (100), Expect = 2e-15 Identities = 354/550 (64%), Gaps = 6/550 (1%) Strand=Plus/Plus Query 128 CTTCGACGACCTATTTGCCGGTGGTCAGCAGCAGGTCGACTTCTCCGCGCCTGAGGGCGG 187 |||| ||||||||||||| || | ||| |||| |||| | || ||||||| || Sbjct 1524 CTTCAACGACCTATTTGCGGGCGCCTCTCAGGAGGTGGACTGCAGTGCCCCTGAGGACGC 1583 Query 188 TATCGCTGC-TGTGCTGCCGGTCCCCGACGAGACCGACAATCTTCAGACGACGGCGCGCA 246 | |||| | | || || | ||| | ||||| || |||| || || | | | Sbjct 1584 CG-CTCTGCCTATTCTTCCCATTCCCAATGAGACAGATGATCTGGCCACAACTACACATA 1642 Query 247 AGCTTGCCGCTCTGGCGGCCATTGTGGAACGCGGTAAGAGCCTGGCCGTCCACACCGGCT 306 || ||| || || || || | || | ||| |||| || || || ||||||| | Sbjct 1643 AGTTTGAGGCCCTTGCTGCGCTGGTCAAGTCCGGCAAGAATCTAGCAGTACACACCGCTT 1702 Query 307 ACGCCGGAGCGGCCCACGCCACCCGGGACCCCGTGGACCTGGCCAAGACATCCATGACGC 366 |||| | | || | || || ||||| || || || || ||| |||||||| | Sbjct 1703 ACGCATGCACTCCCTATCAAACGCGAGACCCAGTTGAGCTAGCTAAGCTATCCATGAATC 1762 Query 367 CCGCCGAGGTGAAGCAATACGAGACATGGGCCCGTGGCATCCGCATGCCTGAGTTCAACT 426 || || || ||||||||| ||| | ||| | ||||| ||||| | || | | Sbjct 1763 CCCCCCAGCTGAAGCAATTTGAGGCCTGGCGCAAAGGCATAAAAATGCCGGCCTTTGATT 1822 Query 427 TCGTCACCAACCGAGAGCCCCTTCGCGGTCAGGAGGG--AGCCCGTAAACGATACGAGCG 484 | | | | |||||| ||| | || | | || | ||| || || |||| Sbjct 1823 GGGCTAACTCCAAGGAGCCCGTTCAAGA-CACTAATGCTAGTCA-TAAGCGCTATGAGCA 1880 Query 485 ACGCGCCCGCGCCATGAATAAGATCTGGAAGACCAATGTTGCAGTGGCAGAGAACGCCAT 544 ||||| ||||| |||||| ||| |||||||| | ||||| | ||||||||||| Sbjct 1881 GCGCGCTCGCGCTATGAATGCGATTTGGAAGACGACCCTTGCAACCCCCGAGAACGCCAT 1940 Query 545 GTTTGTGTCTATTCACCTGACCTACATGGTGCCCCTCGTCGCCGCAGTTTCAAAGATTGA 604 || ||| || || || || || ||| |||||| | | || || | ||| | || Sbjct 1941 GTATGTCTCCATGCATATGGTATATGCGGTTCCCCTCTTGGTGGCCGTGGCGAAGGTGGA 2000 Query 605 GGCGGCGGAGATGGAACTGGTCGGCGGCTCCAACGACCTCACGGAGATGGAGCTGGCCGA 664 | || ||| || ||| || ||||| || | | || ||||||||||| || || || Sbjct 2001 GAGTGCCCAGAGGGCACTAGTAGGCGGTTCTACAGGACTAACGGAGATGGAACTTGCAGA 2060 Query 665 GGTGCAGACC 674 | | |||||| Sbjct 2061 GCTCCAGACC 2070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5529543656832