Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03- 03] 1,257 sequences; 26,782,037 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq222 178 4e-41 >seq222 Length=50042 Score = 178 bits (196), Expect = 4e-41 Identities = 212/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 371 TGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGA 430 ||| || || || || || || ||||| || || ||| ||| ||| || ||| || || Sbjct 11749 TGGTACTACTGCGGCAACAGTGTCCCGAGTGCGTGCCATTTTCGATTTTGTGCCGTCAGA 11808 Query 431 ACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAA 490 || || |||| ||| || || || |||| || ||| | ||||| |||||||| Sbjct 11809 GGAGGGAGAATTGGAATTCAAGAAGGGTGATGTTATAGCAGTTTTGGAGTCAGTGTACAA 11868 Query 491 GGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGA 550 ||| |||||| |||||| |||| || || || || |||||||| ||||||||||| || Sbjct 11869 GGATTGGTGGCGTGGTTCTTTGCGGGGCCACACTGGTATCTTCCCGCTCAACTATGTTGA 11928 Query 551 GAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGT 610 |||||| ||| |||||| || ||| | ||| || || ||||||||||| || || Sbjct 11929 AAAGCTGACGGACCCTACCCCTGAAGAGATTCAGAAGGAGGCACAGATGGAGGCCGAGGT 11988 Query 611 CTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 ||||||||||| |||||| |||||| |||| ||||||| ||||| Sbjct 11989 TTTTGCGGAGATTCGGAACGTTGAGAAGTTGCTTACTCTGCTAAGCAC 12036 Score = 78.8 bits (86), Expect = 3e-11 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881 ||||||| ||||| ||||| || || |||||||||||||| || || |||||||| | | Sbjct 12263 CAGATGACTTCACTCAGCTGAATGAAAAGTTCATCAAGGCTCGTCGTGACTACGAGGCAC 12322 Query 882 TCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 | ||||| || || || ||||| || | |||| ||||| Sbjct 12323 TTCTTGACGCTTCAATATCGCATCCTCCTCAGCATAGCTAC 12363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945380772915