Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20fagacearum_20[genbank_20GCA_5F002018255.1_202017-03-
03] 1,257 sequences; 26,782,037 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq222 178 4e-41
>seq222
Length=50042
Score = 178 bits (196), Expect = 4e-41
Identities = 212/288 (74%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 371 TGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGA 430
||| || || || || || || ||||| || || ||| ||| ||| || ||| || ||
Sbjct 11749 TGGTACTACTGCGGCAACAGTGTCCCGAGTGCGTGCCATTTTCGATTTTGTGCCGTCAGA 11808
Query 431 ACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAA 490
|| || |||| ||| || || || |||| || ||| | ||||| ||||||||
Sbjct 11809 GGAGGGAGAATTGGAATTCAAGAAGGGTGATGTTATAGCAGTTTTGGAGTCAGTGTACAA 11868
Query 491 GGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGA 550
||| |||||| |||||| |||| || || || || |||||||| ||||||||||| ||
Sbjct 11869 GGATTGGTGGCGTGGTTCTTTGCGGGGCCACACTGGTATCTTCCCGCTCAACTATGTTGA 11928
Query 551 GAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGT 610
|||||| ||| |||||| || ||| | ||| || || ||||||||||| || ||
Sbjct 11929 AAAGCTGACGGACCCTACCCCTGAAGAGATTCAGAAGGAGGCACAGATGGAGGCCGAGGT 11988
Query 611 CTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658
||||||||||| |||||| |||||| |||| ||||||| |||||
Sbjct 11989 TTTTGCGGAGATTCGGAACGTTGAGAAGTTGCTTACTCTGCTAAGCAC 12036
Score = 78.8 bits (86), Expect = 3e-11
Identities = 78/101 (77%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881
||||||| ||||| ||||| || || |||||||||||||| || || |||||||| | |
Sbjct 12263 CAGATGACTTCACTCAGCTGAATGAAAAGTTCATCAAGGCTCGTCGTGACTACGAGGCAC 12322
Query 882 TCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922
| ||||| || || || ||||| || | |||| |||||
Sbjct 12323 TTCTTGACGCTTCAATATCGCATCCTCCTCAGCATAGCTAC 12363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945380772915
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |