Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_021223.1
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
seq170 96.9 4e-17
>seq170
Length=128796
Score = 96.9 bits (106), Expect = 4e-17
Identities = 355/550 (65%), Gaps = 6/550 (1%)
Strand=Plus/Minus
Query 128 CTTCGACGACCTATTTGCCGGTGGTCAGCAGCAGGTCGACTTCTCCGCGCCTGAGGGCGG 187
|||| ||||||||||||| || | ||| |||| |||| | || ||||||| ||
Sbjct 117322 CTTCAACGACCTATTTGCGGGCGCCTCTCAGGAGGTGGACTGCAGTGCCCCTGAGGACGC 117263
Query 188 TATCGCTGC-TGTGCTGCCGGTCCCCGACGAGACCGACAATCTTCAGACGACGGCGCGCA 246
| |||| | | || || | ||| | ||||| || |||| || | | | |
Sbjct 117262 CG-CTCTGCCTATTCTTCCCATTCCCAATGAGACAGATGATCTGGCCACAGCTACACATA 117204
Query 247 AGCTTGCCGCTCTGGCGGCCATTGTGGAACGCGGTAAGAGCCTGGCCGTCCACACCGGCT 306
|| ||| || || || || | || | ||| |||| || || || ||||||| |
Sbjct 117203 AGTTTGAGGCCCTTGCTGCGCTGGTCAAGTCCGGCAAGAATCTAGCAGTACACACCGCTT 117144
Query 307 ACGCCGGAGCGGCCCACGCCACCCGGGACCCCGTGGACCTGGCCAAGACATCCATGACGC 366
|||| | | || | || || ||||| | || || |||||| ||||||||| |
Sbjct 117143 ACGCATGCACCCCCTATCAAACGCGAGACCCAGCTGAGCTAGCCAAGCTATCCATGACTC 117084
Query 367 CCGCCGAGGTGAAGCAATACGAGACATGGGCCCGTGGCATCCGCATGCCTGAGTTCAACT 426
||||| || ||||||||| ||| | ||| | |||||| ||||| | || | |
Sbjct 117083 CCGCCCAGCTGAAGCAATTTGAGGCCTGGCGCAAAGGCATCAAAATGCCGGCCTTTGATT 117024
Query 427 TCGTCACCAACCGAGAGCCCCTTCGCGGTCAGGAGGG--AGCCCGTAAACGATACGAGCG 484
| | | | |||||| ||| | || | | || | |||| || || ||||
Sbjct 117023 GGGCTAACTTCAAGGAGCCCGTTCAAGA-CACCAATGCTAGTC-GTAAGCGCTATGAGCA 116966
Query 485 ACGCGCCCGCGCCATGAATAAGATCTGGAAGACCAATGTTGCAGTGGCAGAGAACGCCAT 544
||||| ||||| |||||| ||| |||||||| | ||||| | |||||||||||
Sbjct 116965 GCGCGCTCGCGCTATGAATGCGATTTGGAAGACGACCCTTGCAACCCCCGAGAACGCCAT 116906
Query 545 GTTTGTGTCTATTCACCTGACCTACATGGTGCCCCTCGTCGCCGCAGTTTCAAAGATTGA 604
|| ||| || || || || || || |||||| | | || || | ||| | ||
Sbjct 116905 GTATGTCTCCATGCATATGGTATATGCGGCTCCCCTCTTGGTGGCCGTCGCGAAGGTGGA 116846
Query 605 GGCGGCGGAGATGGAACTGGTCGGCGGCTCCAACGACCTCACGGAGATGGAGCTGGCCGA 664
| || ||| || || || ||||| || | | || ||||||||||| || || ||
Sbjct 116845 GAGTGCCCAGAGGGCGCTAGTAGGCGGTTCTACAGGACTAACGGAGATGGAACTTGCAGA 116786
Query 665 GGTGCAGACC 674
| | ||||||
Sbjct 116785 GCTCCAGACC 116776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 5529528733824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |