Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_021223.1 Length=1762 Score E Sequences producing significant alignments: (Bits) Value seq170 96.9 4e-17 >seq170 Length=128796 Score = 96.9 bits (106), Expect = 4e-17 Identities = 355/550 (65%), Gaps = 6/550 (1%) Strand=Plus/Minus Query 128 CTTCGACGACCTATTTGCCGGTGGTCAGCAGCAGGTCGACTTCTCCGCGCCTGAGGGCGG 187 |||| ||||||||||||| || | ||| |||| |||| | || ||||||| || Sbjct 117322 CTTCAACGACCTATTTGCGGGCGCCTCTCAGGAGGTGGACTGCAGTGCCCCTGAGGACGC 117263 Query 188 TATCGCTGC-TGTGCTGCCGGTCCCCGACGAGACCGACAATCTTCAGACGACGGCGCGCA 246 | |||| | | || || | ||| | ||||| || |||| || | | | | Sbjct 117262 CG-CTCTGCCTATTCTTCCCATTCCCAATGAGACAGATGATCTGGCCACAGCTACACATA 117204 Query 247 AGCTTGCCGCTCTGGCGGCCATTGTGGAACGCGGTAAGAGCCTGGCCGTCCACACCGGCT 306 || ||| || || || || | || | ||| |||| || || || ||||||| | Sbjct 117203 AGTTTGAGGCCCTTGCTGCGCTGGTCAAGTCCGGCAAGAATCTAGCAGTACACACCGCTT 117144 Query 307 ACGCCGGAGCGGCCCACGCCACCCGGGACCCCGTGGACCTGGCCAAGACATCCATGACGC 366 |||| | | || | || || ||||| | || || |||||| ||||||||| | Sbjct 117143 ACGCATGCACCCCCTATCAAACGCGAGACCCAGCTGAGCTAGCCAAGCTATCCATGACTC 117084 Query 367 CCGCCGAGGTGAAGCAATACGAGACATGGGCCCGTGGCATCCGCATGCCTGAGTTCAACT 426 ||||| || ||||||||| ||| | ||| | |||||| ||||| | || | | Sbjct 117083 CCGCCCAGCTGAAGCAATTTGAGGCCTGGCGCAAAGGCATCAAAATGCCGGCCTTTGATT 117024 Query 427 TCGTCACCAACCGAGAGCCCCTTCGCGGTCAGGAGGG--AGCCCGTAAACGATACGAGCG 484 | | | | |||||| ||| | || | | || | |||| || || |||| Sbjct 117023 GGGCTAACTTCAAGGAGCCCGTTCAAGA-CACCAATGCTAGTC-GTAAGCGCTATGAGCA 116966 Query 485 ACGCGCCCGCGCCATGAATAAGATCTGGAAGACCAATGTTGCAGTGGCAGAGAACGCCAT 544 ||||| ||||| |||||| ||| |||||||| | ||||| | ||||||||||| Sbjct 116965 GCGCGCTCGCGCTATGAATGCGATTTGGAAGACGACCCTTGCAACCCCCGAGAACGCCAT 116906 Query 545 GTTTGTGTCTATTCACCTGACCTACATGGTGCCCCTCGTCGCCGCAGTTTCAAAGATTGA 604 || ||| || || || || || || |||||| | | || || | ||| | || Sbjct 116905 GTATGTCTCCATGCATATGGTATATGCGGCTCCCCTCTTGGTGGCCGTCGCGAAGGTGGA 116846 Query 605 GGCGGCGGAGATGGAACTGGTCGGCGGCTCCAACGACCTCACGGAGATGGAGCTGGCCGA 664 | || ||| || || || ||||| || | | || ||||||||||| || || || Sbjct 116845 GAGTGCCCAGAGGGCGCTAGTAGGCGGTTCTACAGGACTAACGGAGATGGAACTTGCAGA 116786 Query 665 GGTGCAGACC 674 | | |||||| Sbjct 116785 GCTCCAGACC 116776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5529528733824