Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chalaropsis_20thielavioides_20[genbank_20GCA_5F001599435.1_202016- 03-01] 12 sequences; 23,333,049 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq2 141 3e-30 >seq2 Length=3936381 Score = 141 bits (156), Expect = 3e-30 Identities = 200/281 (71%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 378 ACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAACCCGGC 437 || || ||||| || || || || ||||| |||| || |||| || ||||| || Sbjct 2987950 ACTGCGGCTACTGTTTCGCGTGTGCGCGCACTTTTTGATTTCATACCGTCGGAGGAGGGG 2988009 Query 438 GAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAGGACTGG 497 ||| ||| || |||||||||||| || || || || ||||| || | ||||||||| Sbjct 2988010 GAGCTGGAGTTTAACAAAGGCGACATCATCGCCGTACTGGAGTCGGTTTTTAAGGACTGG 2988069 Query 498 TGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAGAAGCTG 557 ||| || || || ||||| |||| ||||||||||| ||||||||||| |||||||| Sbjct 2988070 TGGCGAGGCTCGCTTCGTGGCAAGACGGGCATCTTCCCTCTCAACTATGTGGAGAAGCTT 2988129 Query 558 CAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCG 617 || || || || || || || | || || |||||||||||| ||||| | Sbjct 2988130 ACCGACCCCACACCCGAAGAACTGCAGCGTGAGGCCATGATGGAGGCGGAGGTCTTCTCC 2988189 Query 618 GAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 ||||| ||||| || ||||| | | ||||| ||||| Sbjct 2988190 GAGATTCGCAACGTCGAAAAGCTCTTGACGCTGCTCAGCAC 2988230 Score = 100 bits (110), Expect = 9e-18 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881 |||| ||||| || ||||||||||| |||||||||||||| |||||||||||||| || | Sbjct 2988471 CAGACGATTTTACCCAGCTCAACGAAAAGTTCATCAAGGCTCGCCGCGACTACGAGACTC 2988530 Query 882 TCCTTGAAGCCTCGATGTCGCAACC 906 |||| |||||||| ||| | || || Sbjct 2988531 TCCTGGAAGCCTCCATGACCCATCC 2988555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945597907140