Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciborinia_20camelliae_20[genbank_20GCA_5F001247705.1_202015-08-05] 2,604 sequences; 40,732,201 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq117 170 6e-39 >seq117 Length=11153 Score = 170 bits (188), Expect = 6e-39 Identities = 240/336 (71%), Gaps = 7/336 (2%) Strand=Plus/Minus Query 367 CATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCT 426 ||||||| || ||||| ||||| ||||| | ||| || |||||||| ||| | Sbjct 1170 CATCTGGCACTACAGCCGCTACTGTCTCGAGAGTTAAAGCACTTTACGATTTCCAAGCAA 1111 Query 427 CGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGT 486 | || | | || || || || || ||||| |||||||| ||| | | || || | Sbjct 1110 CTGATGCGGATGAATTACAGTTTCGAAAGGGCGATATTATTGCAGTTGTAGGATCAGTAT 1051 Query 487 ACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATG 546 ||||||| ||||||| ||||| | || ||| |||| ||||| ||||| || ||||||| Sbjct 1050 ACAAGGATTGGTGGAGAGGTTCAATACGAGGAAAGACTGGCATATTCCCTCTTAACTATG 991 Query 547 TCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGG 606 | |||||| || |||||| || ||| || || | ||||||| || ||||| || | Sbjct 990 TTGAGAAGTTGGTGGATCCCACACCGGAAGAACTAAAACGAGAAGCGCAAATGGAAGCTG 931 Query 607 AAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT-----AG 661 | || |||||||||||||||||||| |||||| | || | | |||| ||| | Sbjct 930 AGGTTTTTGCGGAGATCAAGAACGTAGAGAAGTTACTTACGTTATTGAGTACTTCGTCAT 871 Query 662 TTCGAGTGCCGACGCTAGGGACAATGAGGAGATCAC 697 || | || || ||||||| |||||||||||||| Sbjct 870 CTCAACTG--GATTCTAGGGATAATGAGGAGATCAC 837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945145849380