Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq6 304 4e-79 >seq6 Length=4175021 Score = 304 bits (336), Expect = 4e-79 Identities = 399/549 (73%), Gaps = 19/549 (3%) Strand=Plus/Minus Query 352 AGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTT 411 ||||||| || | | || || || || || || ||||| || || || || ||||| | Sbjct 1679502 AGCATCAGGCGGTGCCCTCAGGTACGACCGCTGCCACCGTTTCGCGGGTACGGGCCCTCT 1679443 Query 412 ACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGG 471 |||||| || |||||||||||||||||| ||||||||||||||| | ||||| | Sbjct 1679442 TCGACTTTCAACCTTCGGAACCCGGCGAGTTGCAATTCCGCAAAGGCGACGTAATTGCCG 1679383 Query 472 TTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCT 531 |||| || || || ||||| |||||||||||||| ||| | || || || || || |||| Sbjct 1679382 TTCTTGAATCCGTATACAAAGACTGGTGGAAGGGCTCTTTACGCGGCCAAACGGGAATCT 1679323 Query 532 TCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAG 591 ||||||||||||| ||||||||||| || || || || ||||| | ||| ||||| Sbjct 1679322 TCCCCCTCAACTACGTCGAGAAGCTACAAGACCCCACTCCCGAGGAATTGCAGAAAGAAG 1679263 Query 592 CTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGC 651 | || |||||||| || || |||| | |||||||||| || ||||| ||||| || || | Sbjct 1679262 CACAAATGGAGGCAGAGGTGTTTGGGCAGATCAAGAATGTCGAGAAACTGCTCGCCCTTC 1679203 Query 652 TGAGCACTAGTTCGAGTGCC---GACGCTAGGGACAATGAGGAGATCACTTCGCTGTACC 708 | ||||| || || | | | ||| | ||||| |||||||| || | |||||| Sbjct 1679202 TAAGCACGAGCACGGGGGACATGAACGTGCGAGACAACGAGGAGATTACCGAGTTGTACC 1679143 Query 709 ACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGA 768 ||| || || |||| ||||| ||||| || ||||| ||||| || ||| ||||||||| Sbjct 1679142 ACAGCACGTTGGCGATTCGGCCCAAGTTAATTGAGCTGATTGGGAAATATACGCAAAAGA 1679083 Query 769 AGGGTA-----AGTGG--------AATCTTTTAC-GCGAATTTGTGTGTTGGCCACTGAT 814 | |||| || || | || | || | | | || | | || || Sbjct 1679082 AAGGTAAATCCAGAGGAGAGAGAAAGACTGTCACGGTGCAACACAATGCTAACATCT-AT 1679024 Query 815 C-GTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTA 873 | || | |||| |||||| ||| ||||||||||| |||||||||||||||||||| || Sbjct 1679023 CGGTCGTTCAGACGATTTCCAGCAACTCAACGAGAAATTCATCAAGGCACGCCGCGATTA 1678964 Query 874 CGAAACCCT 882 ||| |||| Sbjct 1678963 TGAAGCCCT 1678955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945551689815