Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03- 18] 34 sequences; 52,129,059 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq11 161 3e-36 >seq11 Length=2503103 Score = 161 bits (178), Expect = 3e-36 Identities = 209/289 (72%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429 |||| || ||||| || || || || | || || || | ||||| ||| || || | Sbjct 679381 CTGGCACGACAGCTGCCACTGTATCAAGGGTGCGAGCATTATACGATTTCGTTCCTTCCG 679440 Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489 | || ||||| | | ||| || ||||| ||||||| || |||||||| || |||| Sbjct 679441 AGCCGGGCGAACTCGAGTTCAAGAAGGGCGATGTTATTGCAGTCCTCGAGTCGGTTTACA 679500 Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549 |||| |||||| ||| || || || |||| || || ||||||||||||||||| | Sbjct 679501 AGGATTGGTGGCGGGGCTCGCTCAAGGGGAAGACAGGAATTTTCCCCCTCAACTATGTTG 679560 Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609 ||||||| ||||| || || ||| | | | || || ||||||||||| || | Sbjct 679561 AGAAGCTCACAGATCCCACTCCTGATGAGTTGGCACGTGAGGCACAGATGGAGGCCGAGG 679620 Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 | ||||| ||||||||||| || ||||||||||| | || |||||||| Sbjct 679621 TGTTTGCAGAGATCAAGAATGTCGAGAAGCTGCTCACACTTCTGAGCAC 679669 Score = 91.5 bits (100), Expect = 5e-15 Identities = 155/222 (70%), Gaps = 12/222 (5%) Strand=Plus/Plus Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760 ||| ||||| | || || | || |||||||| ||||| |||| |||| ||||| || Sbjct 679771 GCTCTACCATCAAACGTTGGCCATCAGGCCGAAGCTGATCAAGCTTATTGAGAAGTACTC 679830 Query 761 GCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCA--CTGATCG-- 816 |||||||||||| || | || | || || | | | || || | |||| | Sbjct 679831 CCAAAAGAAGGGTCAGAG--ATGCTCCACTCGCTTGTCTATGCTGCTTATACTGACCAAA 679888 Query 817 ---TGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTA 873 ||| |||||| || || ||||| || |||||||| |||||||| ||||||||||| Sbjct 679889 ACATGT---AGATGACTTTACACAGCTGAATGAGAAGTTTATCAAGGCTCGCCGCGACTA 679945 Query 874 CGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915 ||| | || | ||| | || |||||||| || | ||||| Sbjct 679946 CGAGTCTCTTTTGGAATCATCCATGTCGCATCCTCCTCAGCC 679987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945594070230