Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001593745.1_202016-03-
18] 34 sequences; 52,129,059 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq11 161 3e-36
>seq11
Length=2503103
Score = 161 bits (178), Expect = 3e-36
Identities = 209/289 (72%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429
|||| || ||||| || || || || | || || || | ||||| ||| || || |
Sbjct 679381 CTGGCACGACAGCTGCCACTGTATCAAGGGTGCGAGCATTATACGATTTCGTTCCTTCCG 679440
Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489
| || ||||| | | ||| || ||||| ||||||| || |||||||| || ||||
Sbjct 679441 AGCCGGGCGAACTCGAGTTCAAGAAGGGCGATGTTATTGCAGTCCTCGAGTCGGTTTACA 679500
Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549
|||| |||||| ||| || || || |||| || || ||||||||||||||||| |
Sbjct 679501 AGGATTGGTGGCGGGGCTCGCTCAAGGGGAAGACAGGAATTTTCCCCCTCAACTATGTTG 679560
Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609
||||||| ||||| || || ||| | | | || || ||||||||||| || |
Sbjct 679561 AGAAGCTCACAGATCCCACTCCTGATGAGTTGGCACGTGAGGCACAGATGGAGGCCGAGG 679620
Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658
| ||||| ||||||||||| || ||||||||||| | || ||||||||
Sbjct 679621 TGTTTGCAGAGATCAAGAATGTCGAGAAGCTGCTCACACTTCTGAGCAC 679669
Score = 91.5 bits (100), Expect = 5e-15
Identities = 155/222 (70%), Gaps = 12/222 (5%)
Strand=Plus/Plus
Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760
||| ||||| | || || | || |||||||| ||||| |||| |||| ||||| ||
Sbjct 679771 GCTCTACCATCAAACGTTGGCCATCAGGCCGAAGCTGATCAAGCTTATTGAGAAGTACTC 679830
Query 761 GCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCA--CTGATCG-- 816
|||||||||||| || | || | || || | | | || || | |||| |
Sbjct 679831 CCAAAAGAAGGGTCAGAG--ATGCTCCACTCGCTTGTCTATGCTGCTTATACTGACCAAA 679888
Query 817 ---TGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTA 873
||| |||||| || || ||||| || |||||||| |||||||| |||||||||||
Sbjct 679889 ACATGT---AGATGACTTTACACAGCTGAATGAGAAGTTTATCAAGGCTCGCCGCGACTA 679945
Query 874 CGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915
||| | || | ||| | || |||||||| || | |||||
Sbjct 679946 CGAGTCTCTTTTGGAATCATCCATGTCGCATCCTCCTCAGCC 679987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945594070230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |