Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06- 14] 2,614 sequences; 44,919,977 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1296 143 8e-31 >seq1296 Length=79842 Score = 143 bits (158), Expect = 8e-31 Identities = 204/287 (71%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || || ||||| || ||||| || | || || || | ||||| ||| || || || Sbjct 37164 GGCACGACAGCTGCCACCGTGTCAAGGGTGCGGGCTTTATACGATTTCGTTCCTTCCGAG 37105 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 || || || | | ||| || ||||| | ||||| || |||||||| || |||||| Sbjct 37104 CCGGGTGAACTCGAGTTCAAGAAGGGCGATGTAATTGCAGTCCTCGAGTCGGTCTACAAG 37045 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 || |||||| ||| || || || |||| || || ||||||||||||||||| ||| Sbjct 37044 GATTGGTGGCGGGGCTCGCTCAAGGGGAAGACGGGAATTTTCCCCCTCAACTATGTTGAG 36985 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||||| ||||| || || ||| | | | || || |||||||| || || || Sbjct 36984 AAGCTCACAGATCCCACTCCCGATGAGTTGGCACGCGAGGCACAGATGGAAGCCGAGGTG 36925 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 ||||| ||||||||||| || ||||||||||| | || ||||||| Sbjct 36924 TTTGCAGAGATCAAGAATGTCGAGAAGCTGCTCACACTTTTGAGCAC 36878 Score = 100 bits (110), Expect = 9e-18 Identities = 157/222 (71%), Gaps = 12/222 (5%) Strand=Plus/Minus Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760 ||| |||||| |||| | | || ||||||||| ||||| ||||||||| ||||| || Sbjct 36776 GCTTTACCACCAGACGCTAGCCATCCGGCCGAAGCTGATCAAGCTCATTGAGAAGTACTC 36717 Query 761 GCAAAAGAAGGGTAAGTG--GAATCTTTTACGCGAATTTG-----TGTGTTGGCCACTGA 813 || ||||||||| || | | | | || || | || | | || ||| | Sbjct 36716 CCAGAAGAAGGGTCAGAGATGCTCCACTCACTCGTCTATGCTGCTTATACTGACCAA--A 36659 Query 814 TCGTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTA 873 | | | |||||| || || |||||||| ||||||||||||||||| ||||||||||| Sbjct 36658 ACATAT---AGATGACTTTACACAGCTCAATGAGAAGTTCATCAAGGCTCGCCGCGACTA 36602 Query 874 CGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915 ||| | || | ||| | || |||||||| || | ||||| Sbjct 36601 CGAGTCTCTTTTGGAATCATCCATGTCGCATCCTCCTCAGCC 36560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945144105330