Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20acutatum_20[genbank_20GCA_5F001662755.1_202016-06-
14] 2,614 sequences; 44,919,977 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq1296 143 8e-31
>seq1296
Length=79842
Score = 143 bits (158), Expect = 8e-31
Identities = 204/287 (71%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431
|| || ||||| || ||||| || | || || || | ||||| ||| || || ||
Sbjct 37164 GGCACGACAGCTGCCACCGTGTCAAGGGTGCGGGCTTTATACGATTTCGTTCCTTCCGAG 37105
Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491
|| || || | | ||| || ||||| | ||||| || |||||||| || ||||||
Sbjct 37104 CCGGGTGAACTCGAGTTCAAGAAGGGCGATGTAATTGCAGTCCTCGAGTCGGTCTACAAG 37045
Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551
|| |||||| ||| || || || |||| || || ||||||||||||||||| |||
Sbjct 37044 GATTGGTGGCGGGGCTCGCTCAAGGGGAAGACGGGAATTTTCCCCCTCAACTATGTTGAG 36985
Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611
||||| ||||| || || ||| | | | || || |||||||| || || ||
Sbjct 36984 AAGCTCACAGATCCCACTCCCGATGAGTTGGCACGCGAGGCACAGATGGAAGCCGAGGTG 36925
Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658
||||| ||||||||||| || ||||||||||| | || |||||||
Sbjct 36924 TTTGCAGAGATCAAGAATGTCGAGAAGCTGCTCACACTTTTGAGCAC 36878
Score = 100 bits (110), Expect = 9e-18
Identities = 157/222 (71%), Gaps = 12/222 (5%)
Strand=Plus/Minus
Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760
||| |||||| |||| | | || ||||||||| ||||| ||||||||| ||||| ||
Sbjct 36776 GCTTTACCACCAGACGCTAGCCATCCGGCCGAAGCTGATCAAGCTCATTGAGAAGTACTC 36717
Query 761 GCAAAAGAAGGGTAAGTG--GAATCTTTTACGCGAATTTG-----TGTGTTGGCCACTGA 813
|| ||||||||| || | | | | || || | || | | || ||| |
Sbjct 36716 CCAGAAGAAGGGTCAGAGATGCTCCACTCACTCGTCTATGCTGCTTATACTGACCAA--A 36659
Query 814 TCGTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTA 873
| | | |||||| || || |||||||| ||||||||||||||||| |||||||||||
Sbjct 36658 ACATAT---AGATGACTTTACACAGCTCAATGAGAAGTTCATCAAGGCTCGCCGCGACTA 36602
Query 874 CGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915
||| | || | ||| | || |||||||| || | |||||
Sbjct 36601 CGAGTCTCTTTTGGAATCATCCATGTCGCATCCTCCTCAGCC 36560
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945144105330
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |