Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq4350 194 5e-46
>seq4350
Length=183529
Score = 194 bits (214), Expect = 5e-46
Identities = 243/329 (74%), Gaps = 7/329 (2%)
Strand=Plus/Plus
Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431
|| || || || ||||| ||||| | || || || || ||||||||| |||||||||
Sbjct 45900 GGCACGACGGCTGCTACGGTCTCGAGGGTGCGAGCACTGTACGACTTCGTTCCCTCGGAA 45959
Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491
|| |||||| | | ||| || || || | ||||||||||| || || || ||||||
Sbjct 45960 CCAGGCGAGCTAGAGTTCAAGAAGGGGGATGTCATTGCGGTTCTGGAATCCGTTTACAAG 46019
Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551
|| |||||| |||||| || ||| |||| ||||| ||||| |||||||| ||||||
Sbjct 46020 GATTGGTGGCGGGGTTCACTCAAGGGAAAGACGGGCATTTTCCCTCTCAACTACGTCGAG 46079
Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611
||||| ||| || ||| || ||||| | | | || || || ||||| || || ||
Sbjct 46080 AAGCTCGCGGACCCAACCCCCGATGAGCTGGCGCGCGAGGCCCAAATGGAAGCCGAGGTG 46139
Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCA---CTAGTTCGAGT 668
||||| || ||||||||||| ||||||||||| | ||||||||| | | | || |
Sbjct 46140 TTTGCAGAAATCAAGAACGTCGAGAAGCTGCTCACGTTGCTGAGCACATCAAATACG-GC 46198
Query 669 GCCGACGCTAG--GGACAATGAGGAGATC 695
||||| | || |||||||||||| |||
Sbjct 46199 GCCGA-GAGAGGAGGACAATGAGGAAATC 46226
Score = 96.9 bits (106), Expect = 1e-16
Identities = 163/231 (71%), Gaps = 9/231 (4%)
Strand=Plus/Plus
Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760
||| |||||| |||| || | || | |||||| ||||| ||||||||| ||||| ||
Sbjct 46294 GCTTTACCACCAGACGCTGGCTATTAGACCGAAGCTGATCAAGCTCATTGAGAAGTACTC 46353
Query 761 GCAAAAGAAGGGTAAG--TGGAATCTTT-TACGCGAA-TTTGTGTGT--TGGCCA---CT 811
||| ||||| |||| | ||| || | || || | |||| | |||| ||
Sbjct 46354 GCAGAAGAAAGGTAGGGCTGGCCGCTCTCTATGCTCAGTTTGCCCCCCATCGCCATTACT 46413
Query 812 GATCGTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGAC 871
|||| ||||||||||||| ||| | ||||| |||||||||||||| ||||| |||
Sbjct 46414 GATCACAACGCAGATGATTTCACACAGTTGAACGAAAAGTTCATCAAGGCTCGCCGGGAC 46473
Query 872 TACGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922
||||| | | || || | || |||||||| || | || || |||||
Sbjct 46474 TACGAGTCGTTGCTGGAGTCGTCCATGTCGCATCCTCCTCAACCAAGCTAC 46524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15944839943010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |