Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq4350 194 5e-46 >seq4350 Length=183529 Score = 194 bits (214), Expect = 5e-46 Identities = 243/329 (74%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || || || || ||||| ||||| | || || || || ||||||||| ||||||||| Sbjct 45900 GGCACGACGGCTGCTACGGTCTCGAGGGTGCGAGCACTGTACGACTTCGTTCCCTCGGAA 45959 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 || |||||| | | ||| || || || | ||||||||||| || || || |||||| Sbjct 45960 CCAGGCGAGCTAGAGTTCAAGAAGGGGGATGTCATTGCGGTTCTGGAATCCGTTTACAAG 46019 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 || |||||| |||||| || ||| |||| ||||| ||||| |||||||| |||||| Sbjct 46020 GATTGGTGGCGGGGTTCACTCAAGGGAAAGACGGGCATTTTCCCTCTCAACTACGTCGAG 46079 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||||| ||| || ||| || ||||| | | | || || || ||||| || || || Sbjct 46080 AAGCTCGCGGACCCAACCCCCGATGAGCTGGCGCGCGAGGCCCAAATGGAAGCCGAGGTG 46139 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCA---CTAGTTCGAGT 668 ||||| || ||||||||||| ||||||||||| | ||||||||| | | | || | Sbjct 46140 TTTGCAGAAATCAAGAACGTCGAGAAGCTGCTCACGTTGCTGAGCACATCAAATACG-GC 46198 Query 669 GCCGACGCTAG--GGACAATGAGGAGATC 695 ||||| | || |||||||||||| ||| Sbjct 46199 GCCGA-GAGAGGAGGACAATGAGGAAATC 46226 Score = 96.9 bits (106), Expect = 1e-16 Identities = 163/231 (71%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760 ||| |||||| |||| || | || | |||||| ||||| ||||||||| ||||| || Sbjct 46294 GCTTTACCACCAGACGCTGGCTATTAGACCGAAGCTGATCAAGCTCATTGAGAAGTACTC 46353 Query 761 GCAAAAGAAGGGTAAG--TGGAATCTTT-TACGCGAA-TTTGTGTGT--TGGCCA---CT 811 ||| ||||| |||| | ||| || | || || | |||| | |||| || Sbjct 46354 GCAGAAGAAAGGTAGGGCTGGCCGCTCTCTATGCTCAGTTTGCCCCCCATCGCCATTACT 46413 Query 812 GATCGTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGAC 871 |||| ||||||||||||| ||| | ||||| |||||||||||||| ||||| ||| Sbjct 46414 GATCACAACGCAGATGATTTCACACAGTTGAACGAAAAGTTCATCAAGGCTCGCCGGGAC 46473 Query 872 TACGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 ||||| | | || || | || |||||||| || | || || ||||| Sbjct 46474 TACGAGTCGTTGCTGGAGTCGTCCATGTCGCATCCTCCTCAACCAAGCTAC 46524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15944839943010