Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq979 206 8e-50 >seq979 Length=366216 Score = 206 bits (228), Expect = 8e-50 Identities = 218/287 (76%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || || |||||||||||||| || | || ||||| || ||||||||| || ||||| Sbjct 127357 GGCACGACAGCAGCTACCGTATCAAGGGTCCGCGCGCTATACGACTTCGTTCCGTCGGAG 127298 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 ||||| ||||||| ||| || |||||| | || ||||| || ||||| || |||||| Sbjct 127297 CCCGGTGAGTTGGAGTTCAAAAAGGGCGACGTCATCGCGGTGCTAGAGTCCGTCTACAAG 127238 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 || |||||| |||||| || || |||| || || ||||| |||||||| || ||| Sbjct 127237 GATTGGTGGCGGGGTTCGCTCAAAGGCAAGACGGGTATTTTCCCTCTCAACTACGTTGAG 127178 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||||| ||||| ||| || ||| | | | || |||||||||||||| || || Sbjct 127177 AAGCTCACAGATCCCACCCCCGACGAGTTGGCCCGCGAGGCTCAGATGGAGGCCGAGGTT 127118 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 ||||| |||||||||||||| |||||||| || | ||||||||||| Sbjct 127117 TTTGCCGAGATCAAGAACGTCGAGAAGCTACTGACGCTGCTGAGCAC 127071 Score = 123 bits (136), Expect = 8e-25 Identities = 163/223 (73%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 702 CTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCG 761 || |||||| |||| || | || ||||| ||| ||||| |||| |||| |||||||| Sbjct 126962 CTCTACCACCAGACCTTGGCTATCCGGCCCAAGCTGATCAAGCTTATTGAGAAGTATTCT 126903 Query 762 CAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCA--CTGATCGTGT 819 || ||||||||| | || || | || || | || | | | |||| || Sbjct 126902 CAGAAGAAGGGTGAATGCCCTCCTCCACCCG---TCGTACGCACCCAAAGCTGACACTGG 126846 Query 820 TCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAAC 879 | |||||| ||||||||| | |||||||||||||||||||| ||||| |||||||| | Sbjct 126845 AC-AGATGACTTCACGCAGTTGAACGAGAAGTTCATCAAGGCTCGCCGTGACTACGAGTC 126787 Query 880 CCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 ||| || ||| |||| ||||| || || | |||||| ||||| Sbjct 126786 CCTGCTGGAATCCTCCATGTCACACCCTCCCCAGCCCAGCTAC 126744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945327230580